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gtaggaactaggaacacatgaccttgcgaaccattctgcaacatgccttgattcggaacctttgatttgaactatccaatgtgttgcagCTGCATTGACCTCAGGAGAAAACAACTTTGTTGATGGAGGAGTCGTGGCAGCAGCAAGAACTCTGCCGACATGGTCAGAAGGTGATGTTCCTGCCATACC
species | Oryza sativa |
transcript | LOC_Os05g50980.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTGTCGGTCTTCAACATCGCTGGCTTGCATGATGAGCTCTACTACAATG CTGCATTGACCTCAGGAGAAAACAACTTTGTTGATGGAGGAGTCGTGGCAGEST: gi|88223679|gb|CI223528.1|CI223528
genomic: CCTGTCGGTCTTCAACATTGCTGGCTTGCATGATGAGCTCTACCACAATGgtaggaacta ... tgtgttgcagCTGCATTGACCTCAGGAGAAAACAACTTTGTTGATGGAGGAGTCGTGGCAG
EST: CTACCACAATG CTGCATTGACCTCAGGAGAAAACAACTTTGTTGATGGAGGAGTCGTGGCAGEST: gi|86504726|gb|CI147359.1|CI147359
genomic: CTACCACAATGgtaggaacta ... tgtgttgcagCTGCATTGACCTCAGGAGAAAACAACTTTGTTGATGGAGGAGTCGTGGCAG
EST: GGCTTGCATGATGAGCTCTACCACAATG CTGCATTGACCTCAGGAGAAAACAACTTTGTTGATGGAGGAGTCGTGGCAG
genomic: GGCTTGCATGATGAGCTCTACCACAATGgtaggaacta ... tgtgttgcagCTGCATTGACCTCAGGAGAAAACAACTTTGTTGATGGAGGAGTCGTGGCAG
tctgcaacatgccttgattcggaacctttgatttgaactatccaatgtgttgcagCTGCATTGACCTCAGGAGAAAACAACTTTGTTGATGGAGGAGTCGTGGCAGCAGCAAGAACTCTGCCGACATGGTCAGAAGGTGATGTTCCTGCCATACC
ctttgat putative branch site (score: 9)
tttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaactaggaacacatgaccttgcgaaccattctgcaacatgccttgattcggaacctttgatttgaactatccaatgtgttgcagCTGCATTGACCTCAGGAGAAAACAACTTTGTTGATGGAGGAGTCGTGGCAGCAGCAAGAACTCTGCCGACATGGTCAGAAGGTGATGTTCCTGCCATACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC