1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catgtcataatggataatctaattatgctcccctcttgttcatagtgcattttaaaacatagttaattcgcctcatcgtgtttctcctatgttgatgcagGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGAAGCTGACAGAGACTGCATTTTCCCGAGGGAGTGGTGACAATATCACAT
species | Oryza sativa |
transcript | LOC_Os05g50970.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG GATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGEST: gi|88846730|gb|CI373498.1|CI373498
genomic: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgc ... gttgatgcagGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGG
EST: AGTTTCTTA-TTTAGCTAGTGATGGCCTGTGGGATCTGGTTCCGAATGAG GATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGEST: gi|88969110|gb|CI099061.1|CI099061
genomic: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgc ... gttgatgcagGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGG
EST: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG GATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGEST: gi|88956076|gb|CI092364.1|CI092364
genomic: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgc ... gttgatgcagGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGG
EST: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG GATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGEST: gi|89181946|gb|CI113452.1|CI113452
genomic: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgc ... gttgatgcagGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGG
EST: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG GATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGEST: gi|25807722|gb|CA763683.1|CA763683
genomic: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgc ... gttgatgcagGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGG
EST: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG GATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGEST: gi|86259723|gb|CI065596.1|CI065596
genomic: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgc ... gttgatgcagGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGG
EST: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG GATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGEST: gi|58687048|gb|CK075735.1|CK075735
genomic: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgc ... gttgatgcagGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGG
EST: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG GATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGEST: gi|12623064|gb|AU173277.1|AU173277
genomic: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgc ... gttgatgcagGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGG
EST: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG GATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGG
genomic: AGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgc ... gttgatgcagGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGG
tgcattttaaaacatagttaattcgcctcatcgtgtttctcctatgttgatgcagGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGAAGCTGACAGAGACTGCATTTTCCCGAGGGAGTGGTGACAATATCACAT
tgttgat putative branch site (score: 7)
tttaaaacatagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtcataatggataatctaattatgctcccctcttgttcatagtgcattttaaaacatagttaattcgcctcatcgtgtttctcctatgttgatgcagGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGAAGCTGACAGAGACTGCATTTTCCCGAGGGAGTGGTGACAATATCACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
catgtca
- - - - - - - - - - - - -tgctccc
- - - - - - - - - - - - - - - - - - - - - - gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaacatag