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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtaatttgcttcaattttctggaaacagcttttgtcaattatatctttgatgaattaaaacaactttctgggattatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGGAAGCATGGTGTTAG

Basic information

species Oryza sativa
transcript LOC_Os05g49200.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g49200.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM5G899123_T01 (Zea mays), 3'ss of exon 4
--------gtttgtaat--ttgcttcaattttctggaaacagcttttgtcaattatatctttga----tgaattaaaacaactttctg--ggattatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGGAAGCATGGTGTTAG
         ||   ||   | | ||   |||||||    | | |||  ||||||   ||||  |    ||   |||  |||||| ||   || |||| ||||||||||| ||| | || ||||| ||||||||||||||||| ||||||||||| |  |||||||| ||
gtttgtatattccaaaccatggatttgtttttctgattgctggtttgatcaattgc-tcttgaagctctgcggtaactcaacttgctattgggttattttgcagACACAACCAGCGAAGATCTGTTCTCAGGTTGGTCTGTGCACTTTTGATGGCACTCATGGTGTCAG

upper sequence: LOC_Os05g49200.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G065757_T02 (Zea mays), 3'ss of exon 9
--------gtttgtaattt--gcttcaattttctggaaacagcttttgtcaattatatctttga----tgaattaaaacaactttctg--ggattatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGGAAGCATGGTGTTAG
         ||   || |   | ||   |||||||    | | |||  |||||| | ||||  |    ||   |||  |||||| ||   || |||| ||||||||||| ||| | || ||||| ||||||||||||||||| ||||||||||| |  |||||||| ||
gtttgtatattccaaactatggatttgcttttctgattgctggtttgatcaatt-tctcttgaagctctgcggtaactcaacttgctattgggttattttgcagACACAACCAGCGAAGATCTGTTCTCAGGTTGGTCTGTGCACTTTTGATGGCACCCATGGTGTCAG

upper sequence: LOC_Os05g49200.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G153977_T01 (Zea mays), 3'ss of exon 3
-------gtttgtaatttgcttcaattttctggaaacagcttttgtcaattatatctttgatgaattaaaacaactttctgggattatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGGAAGCATGGTGTTAG
         ||  ||  |   |   ||||||||   | | ||| |||||||   | |      || | ||    || | |||  |||| |||||||| || ||| | || ||||| ||||||||||| ||||| ||||||||||| |  || ||||||||
gtttgtatgttccaaactatgttgcttttctggttgctggtttggtcaattgcttttggaggtaactcaacttgctatttgg--ttattttgcagACGCAACCAGCGAAGATCTGTTCTCAGGTTGGCCTGTGCACTTTTGATGGCACTCACGGTGTTAG

upper sequence: LOC_Os05g49200.2 (Oryza sativa), 3'ss of exon 8
lower sequence: AT1G11910.1 (Arabidopsis thaliana), 3'ss of exon 9
gtt--tgtaatttgc-ttcaattttctggaaacagcttttgtcaattatatctttgatgaattaaaacaactttctggga-------ttatg--ttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGGAAGCATGGTGTTAG
|||  |||  ||    ||  | |  ||   || | || |    | | ||||  |     |||||      ||| |            ||  |  |||||||| || ||    ||||||||||| ||| |||||||||||||||||||||| |  | |||||| ||
gttagtgtgcttaatattggactagctaataaaatctgtgacaagtcatatgctgtgcaaattattttggcttaccattcatcccccttgcgccttgcagACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGGTACCCGTGGTGTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681832|gb|CB678107.1|CB678107
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|33795396|gb|CF323568.1|CF323568
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|29637769|gb|CB642778.1|CB642778
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|29664333|gb|CB660608.1|CB660608
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|29687282|gb|CB683557.1|CB683557
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|58668482|gb|CK057168.1|CK057168
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|33683538|gb|CF311777.1|CF311777
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|58596651|gb|CK007179.1|CK007179
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|125863426|gb|EL586708.1|EL586708
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|58672644|gb|CK061330.1|CK061330
EST:     AACAGAT-CTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: AACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|29675128|gb|CB671403.1|CB671403
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGGTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|29660446|gb|CB656721.1|CB656721
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|29637768|gb|CB642777.1|CB642777
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|29686812|gb|CB683087.1|CB683087
EST:     CAGTTGTTTTTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|58668099|gb|CK056785.1|CK056785
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|29660450|gb|CB656725.1|CB656725
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|218501795|gb|FG948052.1|FG948052
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|29660989|gb|CB657264.1|CB657264
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGAT
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGAT
EST: gi|29627822|gb|CB632833.1|CB632833
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|58587529|gb|CF985837.1|CF985837
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|55827430|gb|AU030192.2|AU030192
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         G
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcag-
EST: gi|55827430|gb|AU030192.2|AU030192
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         G
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcag-
EST: gi|29675906|gb|CB672181.1|CB672181
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTGGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|218480608|gb|FG959514.1|FG959514
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|29660990|gb|CB657265.1|CB657265
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|218495569|gb|FG950148.1|FG950148
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|29657723|gb|CB653998.1|CB653998
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|88396547|gb|CI601030.1|CI601030
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAACAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|58592991|gb|CF991299.1|CF991299
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|29669083|gb|CB665358.1|CB665358
EST:     AG-TGTTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: AGTTG-TTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|33381232|gb|CF196575.1|CF196575
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCANNTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|58599924|gb|CK010452.1|CK010452
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|218481767|gb|FG945139.1|FG945139
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG
EST: gi|218486960|gb|FG945468.1|FG945468
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCT
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCT
EST: gi|66924030|gb|CX110878.1|CX110878
EST:     CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAG                         ACACAGCCCTCAAAAATTTGCTCTCAAGTTGGTCTGTGTACTTTTGATGGG
genomic: CAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 65 (downstream exon)
Score: 153

AATCAATGAGAAGATCGGTGCTACTGGGGTAGTCAGCCAAGAATGCAAGACAGTTGTTTCTCAATATGGACAACAGATCCTAGATCTGTTGCTTGCTGAGgtttgtaatt ... tatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGGAAGCATGGTGTTAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtcaattatatctttgatgaattaaaacaactttctgggattatgttgcagACACAGCCATCAAAAATCTGCTCTCAGGTTGGTCTGTGTACTTTTGATGGGAAGCATGGTGTTAG
               ctttgat  putative branch site (score: 153)
       aattatatctttgatg  TA-rich tract