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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaattatgtaaatcatcatatgttggaagcagccatgagcagatcaaactgaagtcctgctcttgaggtggcaatttcatgattttttttcttttgtagGTTCATTCTAGACAAGAAAATCGGTCTTGGCCAACCGAAGAGGATTGAAAACGCCAAGATTTTGGTTGCAAATACTGCTATGGACACCGACAAAGTTAAG

Basic information

species Oryza sativa
transcript LOC_Os05g48290.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g48290.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA11G19220.1 (Glycine max), 3'ss of exon 9
gaaattatgtaaatcatcatatgttggaagcagccatgagcagatcaaactgaagtcctgctcttgaggtg-gcaatttcatgattttttttcttttg--tagGTTCATTCTAGACAAGAAAATCGGTCTTGGCCAACCGAAGAGGATTGAAAACGCCAAGATTTTGGTTGCAAATACTGCTATGGACACCGACAAAGTTAAG
    || |   |||| |  ||| |      ||  |||  ||  ||||   |      |||      | ||  ||  | |     |||||  | |||||   || |||||||| ||||||||||| ||| |||| ||||| ||| |||| || || || |||||  |||| ||||| ||||| |||||||| |||||||| |||
--tgttttaataatcttgttatttatttttcaagcatt-gcttatcattttattactctgggtaaaaagtaagctttctttctgtttttaattttttgatcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAGCGGATAGAGAATGCAAAGATACTGGTGGCAAACACTGCCATGGACACAGACAAAGTGAAG

upper sequence: LOC_Os05g48290.1 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv18s0001g00480.t01 (Vitis vinifera), 3'ss of exon 9
gaaattatgta--aatcatcatatgttggaagcagccatgagcagatcaaactgaagtcctgct--cttgaggtggcaatttcatgattttttttcttttgtagGTTCATTCTAGACAAGAAAATCGGTCTTGGCCAACCGAAGAGGATTGAAAACGCCAAGATTTTGGTTGCAAATACTGCTATGGACACCGACAAAGTTAAG
 |   ||| |   ||   || | | ||   |   | ||  | || |||  |   || | | |     ||    ||  ||||     || || |||  |   |||||| ||||| |||||||| || ||  |||| ||||| ||  | || || || || ||||||||||| ||||||||||| ||||||||||| ||||| |||
cattctatattccaactgtcttctcttttcaattgtca--aacacatccgatgcaaattcagtaaattttttttgttaatt--ggaatcttgttttctgcatagGTTTATTCTTGACAAGAAGATAGGCATTGGTCAACCAAAACGCATAGAGAATGCAAAGATTTTGGTGGCAAATACTGCAATGGACACCGATAAAGTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaactgaagtcctgctcttgaggtggcaatttcatgattttttttcttttgtagGTTCATTCTAGACAAGAAAATCGGTCTTGGCCAACCGAAGAGGATTGAAAACGCCAAGATTTTGGTTGCAAATACTGCTATGGACACCGACAAAGTTAAG
                              tttcatgatttttttt  CT-rich tract
                            aatttcatgatttttt  TA-rich tract