1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cccgtgtgaattcgttttctaggttgcaaatatactgttttagaaatactagttttctaaaaaaaggttaatctagttctactcatttttttttgcacagCTTCTATTTCCTACAGGTGATGCTGCACGCCCGTTCTCTATGCTTGGCCTTGGTGACATTGTAATACCTG
species | Oryza sativa |
transcript | LOC_Os05g36070.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCACTCCAGTTATGGTCAGTGTTGCCAAGTCATTTGATGCTCCAATAAAG CTTCTATTTCCTACAGGTGATGCTGCACGCCCGTTCTCTATGCTTGEST: gi|8859158|gb|AU096476.1|AU096476
genomic: TCACTCCAGTTATGGTCAGTGTTGCCAAGTCATTTGATGCTCCAATAAAGgtaagtattc ... ttttgcacagCTTCTATTTCCTACAGGTGATGCTGCACGCCCGTTCTCTATGCTTG
EST: CCAAGTCATTTGATGCTCCAATAAAG -TTCTATTTCCTACAGGTGATGCTGCACG-CCGTTCTCTATGCTTGGCCTTEST: gi|29628338|gb|CB633349.1|CB633349
genomic: CCAAGTCATTTGATGCTCCAATAAAGgtaagtattc ... ttttgcacagCTTCTATTTCCTACAGGTGATGCTGCACGCCCGTTCTCTATGCTTGGCCTT
EST: TCACTCCAGTTATGGTCAGTGTTGCCAAGTCATTTGATGCTCCAATAAAG CTTCTATTTCCTACAGGTGATGCTGCACGCCCGTTCTCTATGCTTGGCCTTEST: gi|29628337|gb|CB633348.1|CB633348
genomic: TCACTCCAGTTATGGTCAGTGTTGCCAAGTCATTTGATGCTCCAATAAAGgtaagtattc ... ttttgcacagCTTCTATTTCCTACAGGTGATGCTGCACGCCCGTTCTCTATGCTTGGCCTT
EST: TCACTCCAGTTATGGTCAGTGTTGCCAAGTCATTTGATGCTCCAATAAAG CTTCTATTTCCTACAGGTGATGCTGCACGCCCGTTCTCTATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTTGCCAAGTCATTTGATGCTCCAATAAAGgtaagtattc ... ttttgcacagCTTCTATTTCCTACAGGTGATGCTGCACGCCCGTTCTCTATGCTTGGCCTT
atactagttttctaaaaaaaggttaatctagttctactcatttttttttgcacagCTTCTATTTCCTACAGGTGATGCTGCACGCCCGTTCTCTATGCTTGGCCTTGGTGACATTGTAATACCTG
ttctactcattttttt CT-rich tract
agttttctaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccgtgtgaattcgttttctaggttgcaaatatactgttttagaaatactagttttctaaaaaaaggttaatctagttctactcatttttttttgcacagCTTCTATTTCCTACAGGTGATGCTGCACGCCCGTTCTCTATGCTTGGCCTTGGTGACATTGTAATACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC