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...atagttgacagaccacacttatttttgaaatcaagttgtcaccctttgacatttctgtagttctatatgatgaccgcagttctatgattttattttgcagGTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGCAAGCATTTATGTTCTGAACTAGAGCAGATACATGATGCTCTGTGTGGTT
species | Oryza sativa |
transcript | LOC_Os05g33810.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAAATATTACCACATCAAAGCTGGATACTCATGGACCCGCATTTGTGGAA GTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGCEST: gi|29682373|gb|CB678648.1|CB678648
genomic: TAAATATTACCACATCAAAGCTGGATACTCATGGACCCGCATTTGTGGAAgtaagtatct ... tattttgcagGTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGC
EST: TAAATATTACCACATCAAAGCTGGATACTCATGGACCCGCATTTGTGGAA GTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGCEST: gi|218482951|gb|FG948113.1|FG948113
genomic: TAAATATTACCACATCAAAGCTGGATACTCATGGACCCGCATTTGTGGAAgtaagtatct ... tattttgcagGTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGC
EST: TAAATATTACCACATCAAAGCTGGATACTCATGGACCCGCATTTGTGGAA GTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGCEST: gi|29619149|gb|CB624161.1|CB624161
genomic: TAAATATTACCACATCAAAGCTGGATACTCATGGACCCGCATTTGTGGAAgtaagtatct ... tattttgcagGTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGC
EST: TAAATATTACCACATCAAAGCTGGATACTCATGGACCCGCATTTGTGGAA GTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGCEST: gi|313084053|gb|HO213836.1|HO213836
genomic: TAAATATTACCACATCAAAGCTGGATACTCATGGACCCGCATTTGTGGAAgtaagtatct ... tattttgcagGTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGC
EST: TAAATATTACCACATCAAAGCTGGATACTCATGGACCCGCATTTGTGGAA GTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGCEST: gi|218498191|gb|FG955475.1|FG955475
genomic: TAAATATTACCACATCAAAGCTGGATACTCATGGACCCGCATTTGTGGAAgtaagtatct ... tattttgcagGTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGC
EST: TAAATATTACCACATCAAAGCTGGATACTCATGGACCCGCATTTGTGGAA GTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGC
genomic: TAAATATTACCACATCAAAGCTGGATACTCATGGACCCGCATTTGTGGAAgtaagtatct ... tattttgcagGTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGC
ttgacatttctgtagttctatatgatgaccgcagttctatgattttattttgcagGTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGCAAGCATTTATGTTCTGAACTAGAGCAGATACATGATGCTCTGTGTGGTT
ctttgac putative branch site (score: 30)
ttttatttt putative PPT
ttctatgattttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagttgacagaccacacttatttttgaaatcaagttgtcaccctttgacatttctgtagttctatatgatgaccgcagttctatgattttattttgcagGTGGAAAACATGTTTGGGCTATCAAATTTTGTTCCTATCCTTGTTGGTAGCAAGCATTTATGTTCTGAACTAGAGCAGATACATGATGCTCTGTGTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - -aaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - ttctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgatga