1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggagtgctaggtgctgcccctgaagtcctggtgcgctaacttggccatcctcattacacaagggatgtgccgcatgcgacagcttttttgactgtccagCAGCGTCTTCTTGGTCCTTTCGTTTGGAGAGGGTGGATCATGGAGCTGCAAGGATTGGTTGGTTGGGATGATCAGTTTTGACACTTCGGATGTTGTAGCT
species | Oryza sativa |
transcript | LOC_Os05g31062.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACCCTCGTCC AEST: gi|88219410|gb|CI218970.1|CI218970
genomic: AACCCTCGTCCgtggcagtca ... gactgtccag-
EST: AACCCTCGTCC AEST: gi|88219410|gb|CI218970.1|CI218970
genomic: AACCCTCGTCCgtggcagtca ... gactgtccag-
EST: AACCCTCGTCC A
genomic: AACCCTCGTCCgtggcagtca ... gactgtccag-
ccatcctcattacacaagggatgtgccgcatgcgacagcttttttgactgtccagCAGCGTCTTCTTGGTCCTTTCGTTTGGAGAGGGTGGATCATGGAGCTGCAAGGATTGGTTGGTTGGGATGATCAGTTTTGACACTTCGGATGTTGTAGCT
ttttgac putative branch site (score: 3)
cttttttg CT-rich tract
ttttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggagtgctaggtgctgcccctgaagtcctggtgcgctaacttggccatcctcattacacaagggatgtgccgcatgcgacagcttttttgactgtccagCAGCGTCTTCTTGGTCCTTTCGTTTGGAGAGGGTGGATCATGGAGCTGCAAGGATTGGTTGGTTGGGATGATCAGTTTTGACACTTCGGATGTTGTAGCT
- - gtgctag
- - - - - - tgctgcc
- - - - - - - - - -cctgaag
- - - - - - - - - - - - - - ctggtgc
- - - - - - - - - - - - - - - - - - - - - - gccatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcatgc