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...attgataatccttgtgacattttctgactccaccatgaactgtaactgtaatttcaagaaatttatggatttactaccaccttttcacttgtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTG
species | Oryza sativa |
transcript | LOC_Os05g29860.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTG GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTEST: gi|29675292|gb|CB671567.1|CB671567
genomic: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacccatct ... gtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
EST: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTG GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTEST: gi|66915672|gb|CX102520.1|CX102520
genomic: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacccatct ... gtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
EST: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAATTGTG GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTEST: gi|33683403|gb|CF311642.1|CF311642
genomic: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacccatct ... gtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
EST: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTG GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTEST: gi|88974714|gb|CI023010.1|CI023010
genomic: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacccatct ... gtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
EST: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTG GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTEST: gi|88956821|gb|CI009049.1|CI009049
genomic: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacccatct ... gtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
EST: ATTCTGTATATATGAGCAACTTCGAATTGGTTACGAAGTTGTG GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
genomic: ATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacccatct ... gtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
ctgtaatttcaagaaatttatggatttactaccaccttttcacttgtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTG
ccttttcacttgtct CT-rich tract
atttcaagaaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgataatccttgtgacattttctgactccaccatgaactgtaactgtaatttcaagaaatttatggatttactaccaccttttcacttgtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - cttgtga
- - - - - - - - - - tttctga
- - - - - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - caagaaa