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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacgaatccgtttttgtctccctatgttcaatgcaaactatttaattataacaacttaactccttattttcactttaagGTCACACCATGAGAAAATTGTGATAGTAGATAATCAAGTATGCTATCTTGGAGGTCTTGATCTGTGCTTTGGTCGCTACGATAATTCTGCGCACAAACTT

Basic information

species Oryza sativa
transcript LOC_Os05g29050.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g29050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 8
gtatgacgaatccgtttttgtct-----ccctatgttcaatgcaaa--ctatttaattataac--aacttaactcctt-----------attttcactttaagGTCACACCATGAGAAAATTGTGATAGTAGATAATCAAGTATGCTATCTTGGAGGTCTTGATCTGTGCTTTGGTCGCTACGATAATTCTGCGCACAAACTT
||||||   ||   || ||  ||     |  | |||| |||  |||   | ||| ||| ||    | || || |  ||            ||||  |||||||||||||||||||||| |||||||| || |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | ||| ||||||| | 
gtatgattgattttttgttccctgtttcctttttgttaaataaaaagttttttttattttatttgatctgaattttttttacttttattgttttgcctttaagGTCACACCATGAGAAGATTGTGATTGTTGATAATCAAGTATGTTATATTGGAGGTCTTGATCTGTGCTTTGGTCGCTACGATAGTCCTGAGCACAAAGTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58692366|gb|CK081053.1|CK081053
EST:     GTAAAAGTTCTGCGATATCCTGATCATTTCTCAAGCGGTGTATACTTATG                         GTCACACCATGAGAAAATTGTGATAGTAGATAATCAAGTATGCTATCTTGG
genomic: GTAAAAGTTCTGCGATATCCTGATCATTTCTCAAGCGGTGTATACTTATGgtatgacgaa ... tcactttaagGTCACACCATGAGAAAATTGTGATAGTAGATAATCAAGTATGCTATCTTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcaatgcaaactatttaattataacaacttaactccttattttcactttaagGTCACACCATGAGAAAATTGTGATAGTAGATAATCAAGTATGCTATCTTGGAGGTCTTGATCTGTGCTTTGGTCGCTACGATAATTCTGCGCACAAACTT
                                   ctccttattttcactt  CT-rich tract
          aaactatttaattata  TA-rich tract