1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attatttgtgtttatttgtacaaaccgcttctgttgattactgctacatgccatatttctcgtttctagtggttgtattaatagttggttgtttgtgcagGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATC
species | Oryza sativa |
transcript | LOC_Os05g28280.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAG GCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTEST: gi|58587681|gb|CF985989.1|CF985989
genomic: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGgtacacatat ... gtttgtgcagGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTT
EST: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAG GCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTEST: gi|58603687|gb|CK014215.1|CK014215
genomic: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGgtacacatat ... gtttgtgcagGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTT
EST: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAG GCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTEST: gi|6850180|gb|AU082299.1|AU082299
genomic: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGgtacacatat ... gtttgtgcagGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTT
EST: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAG GCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTEST: gi|33793355|gb|CF322559.1|CF322559
genomic: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGgtacacatat ... gtttgtgcagGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTT
EST: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAG GCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTEST: gi|4716522|gb|AU057638.1|AU057638
genomic: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGgtacacatat ... gtttgtgcagGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTT
EST: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAG GCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTEST: gi|8856487|gb|AU093805.1|AU093805
genomic: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGgtacacatat ... gtttgtgcagGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTT
EST: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAG GCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTEST: gi|86888607|gb|CI305675.1|CI305675
genomic: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGgtacacatat ... gtttgtgcagGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTT
EST: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAG GCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTT
genomic: CATGAATCATGAATTATTGCAGCCGTACCCTGTCCTTCACGAGAAGCCAGgtacacatat ... gtttgtgcagGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTT
acatgccatatttctcgtttctagtggttgtattaatagttggttgtttgtgcagGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATC
tattaat putative branch site (score: 40)
ttgtattaatagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatttgtgtttatttgtacaaaccgcttctgttgattactgctacatgccatatttctcgtttctagtggttgtattaatagttggttgtttgtgcagGCGACCTTGTTGCACACATCAAGTTTACTGTGCTTCTGCTGCCATCTGGTTCACAGAGGGTAACATCGCATTCACTTCAGGAGTTGCAGCCCACTAAATC
- - -ttgtgtt
- - - - - - - - -gtacaaa
- - - - - - - - - - - - - gcttctg
- - - - - - - - - - - - - - - - - - -ttactgc
- - - - - - - - - - - - - - - - - - - - - - tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggttg