1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatttgatacatctgttctgaatcacacaatcccccttgtttttagtacagtacatcataattagtcaacagcttttgattgaaaaaattgaaaaaaaaacacccttgcacatttcagCTCAAGCAGAATGGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATTGGCTTGCCCTG
species | Oryza sativa |
transcript | LOC_Os05g28200.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACATATATTCAGCTCCACCTCTGAAG CTCAAGCAGAATGGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATTEST: gi|86596619|gb|CI286532.1|CI286532
genomic: TACATATATTCAGCTCCACCTCTGAAGgtatttgata ... cacatttcagCTCAAGCAGAATGGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATT
EST: CTGTTGGTGGGTCCTTGCTTTCTTACATATATTCAGCTCCACCTCTGAAG CTCAAGCAGAATGGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATTEST: gi|86907178|gb|CI292792.1|CI292792
genomic: CTGTTGGTGGGTCCTTGCTTTCTTACATATATTCAGCTCCACCTCTGAAGgtatttgata ... cacatttcagCTCAAGCAGAATGGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATT
EST: CTGTTGGTGGGTCCTTGCTTTCTTACATATATTCAGCTCCACCTCTGAAG CTCAAGCAGAATGGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATT
genomic: CTGTTGGTGGGTCCTTGCTTTCTTACATATATTCAGCTCCACCTCTGAAGgtatttgata ... cacatttcagCTCAAGCAGAATGGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATT
agtcaacagcttttgattgaaaaaattgaaaaaaaaacacccttgcacatttcagCTCAAGCAGAATGGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATTGGCTTGCCCTG
ttttgat putative branch site (score: 4)
cccttgc putative PPT
ttttgattgaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgatacatctgttctgaatcacacaatcccccttgtttttagtacagtacatcataattagtcaacagcttttgattgaaaaaattgaaaaaaaaacacccttgcacatttcagCTCAAGCAGAATGGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATTGGCTTGCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA