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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcagtgtgcacctttatgcttgttcatggaacaaataaaatgctaaccactttttttcgaacaaaaggacaaactcacttattgtggtttttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCTATCAATCAGGGTTTTCACATGCTCTCAAG

Basic information

species Oryza sativa
transcript LOC_Os05g28180.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g28180.3 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G416667_T03 (Zea mays), 3'ss of exon 17
---------------------------------------------------------------ttcagtgtgcacctttatgc------ttgttcatggaacaaataaaatgctaaccactttttttcgaacaaaaggacaaactcacttattgtggttt--ttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCTATCAATCAGGGTTTTCACATGCTCTCAAG
                                                                |  |||||||| | |||||          |    | | | |||  ||  || ||||        | || |  |   ||  ||  ||| |    |||  ||||||||||| |||||||||||||||||||||||||| ||||| || || |||||||| || ||||| |||||||||||||||||||||
gtactcgctacttccctcgcttttttgcgccttttgattgttctttcacacatgcagcacgagctttgtgtgcacgtgtatgcagcacacacctttacgcatagatactattgtacccacgccaaaagggacgagtgactaatgtccattactccattttgattgtttcagCTGTGGAAGCTCAGTTCTTGTGATTTATGCGAAATTGCGAGGAACTCTGTTTACCAATCTGGGTTTTCACATGCTCTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675538|gb|CB671813.1|CB671813
EST:     TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCA                         CTCTGGAAGGTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
genomic: TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCAgtactccctc ... tttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
EST: gi|27548799|gb|CA767547.2|CA767547
EST:     TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCA                         CTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
genomic: TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCAgtactccctc ... tttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
EST: gi|29638453|gb|CB643462.1|CB643462
EST:     TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCA                         CTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
genomic: TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCAgtactccctc ... tttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
EST: gi|29637475|gb|CB642484.1|CB642484
EST:     TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCA                         CTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
genomic: TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCAgtactccctc ... tttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
EST: gi|87022773|gb|CI269709.1|CI269709
EST:     AAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCA                         CTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
genomic: AAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCAgtactccctc ... tttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccactttttttcgaacaaaaggacaaactcacttattgtggtttttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCTATCAATCAGGGTTTTCACATGCTCTCAAG
                                           tttttgtttc  CT-rich tract
                                           tttttgttt  TA-rich tract