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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttgtacttgtctatttaaaatatatgcagtacagtgaattttgaaaaacctatattcactactataaaagtttgatgatttgtatgttgacatgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGAAATAGTCGTAGATTCAAAGACAAGAGTCTCGAGAAACTCAGGTCAGGCT

Basic information

species Oryza sativa
transcript LOC_Os05g12170.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86893237|gb|CI313386.1|CI313386
EST:     ATTCCTGCCTTCAGACTCTGATATGTTTGAATCCCCGGATGGTGACATAG                         TTGAGTATTTGGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|15852898|gb|BI805694.1|BI805694
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|32948032|gb|BP184604.1|BP184604
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAAGTCAGACGAAGAG
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCA-GTCAGACGAAGAG
EST: gi|29637797|gb|CB642806.1|CB642806
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|86595095|gb|CI260334.1|CI260334
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGATATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|29662992|gb|CB659267.1|CB659267
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|88243222|gb|CI244344.1|CI244344
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGAAATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|86861127|gb|CI326608.1|CI326608
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|86502177|gb|CI144810.1|CI144810
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|25806630|gb|CA762591.1|CA762591
EST:     ATTCCTGCCTTCAGACTTTGATATTTTTGAATCCCCGGATGATGACATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|29637418|gb|CB642427.1|CB642427
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|2801259|gb|AA754553.1|AA754553
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTNAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|89168347|gb|CI109551.1|CI109551
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|88375077|gb|CI523342.1|CI523342
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAG                         TTGAGTATTTTGCTGATGCCATCAATGGCCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|29671009|gb|CB667284.1|CB667284
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
EST: gi|86873554|gb|CI329932.1|CI329932
EST:     ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAG                         TTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA
genomic: ATTCCTGCCTTCAGACTCTGATATTTTTGAATCCCCGGATGATGACATAGgtaattttgt ... atgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacctatattcactactataaaagtttgatgatttgtatgttgacatgattccagTTGAGTATTTTGCTGATGCCATCAATGGGCCTTCTCAGTCAGACGAAGAGAAATAGTCGTAGATTCAAAGACAAGAGTCTCGAGAAACTCAGGTCAGGCT
                                      tgttgac  putative branch site (score: 3)
             tactataaaagttt  TA-rich tract