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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacccaatctttgctcactgaatttcttcagttctgcttcatgaaaatcttcagtagattgattgatcttgtctcactgcttctgtgttgtgtgtttgtgtagTACGAGTACGGCATGGACTCCTGCTTCAATGACTCCAAAGAGTTCGTCTTTGCTCGCCTCTGCCTCGG

Basic information

species Oryza sativa
transcript LOC_Os05g09050.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g09050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G000376_T01 (Zea mays), 3'ss of exon 7
gtgacccaatctttgctcactgaatttcttcagttctgcttcatgaaaatcttcagtagattgattgatcttgtc-tcactgcttctgtgttgtgtgtttgtgtagTACGAGTACGGCATGGACTCCTGCTTCAATGACTCCAAAGAGTTCGTCTTTGCTCGCCTCTGCCTCGG
                    |   | | | ||  || |||| |   | | | |   |        ||| | |||| |||    |  | | |    | |   |  |||| |||||||| |||||||| |||||||| |||||| |||| ||||||||||| || |||||||| ||
-------------------gtacgtatatacatctcagcttaacatacaacatgcttcagcgctgtgagcctgtcatcatctttgttctctgaattctgcatacagTATGAGTACGGGATGGACTCGTGCTTCAACGACTCCGAAGAATTCGTCTTTGCACGTCTCTGCCTTGG

upper sequence: LOC_Os05g09050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G325653_T01 (Zea mays), 3'ss of exon 6
gtgacccaatctttgctcactgaatttcttcagttctgcttcatgaaaatcttca-gtagattgattgat---cttgtctcactgcttctgtgt-tgtgtgtttgtgtagTACGAGTACGGCATGGACTCCTGCTTCAATGACTCCAAAGAGTTCGTCTTTGCTCGCCTCTGCCTCGG
||      ||   ||  ||||  | |    |||   ||| | ||  |  |    | ||    ||   | |       ||    || |||| ||  | || ||  ||  |||| ||||||||||||||||| |||||||| |||||| |||||||||||||||| || |||||||| ||
gtacgtatatacctggccacttcagtctaacagca-tgcataatcgatctacgtacgtctgatggccggtgcgtcgatcgtcttggttctctgaatctgcgtgcgttcagTATGAGTACGGCATGGACTCGTGCTTCAACGACTCCGAAGAGTTCGTCTTTGCACGACTCTGCCTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcagtagattgattgatcttgtctcactgcttctgtgttgtgtgtttgtgtagTACGAGTACGGCATGGACTCCTGCTTCAATGACTCCAAAGAGTTCGTCTTTGCTCGCCTCTGCCTCGG
                      gtctcac  putative branch site (score: 3)
         attgatt  TA-rich tract