1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgtgtgtttatttgctataataacacacctgatgttagtttgattcttgtgtctgagtcaactacctctaaaccttgtttcacagGTCGTGCAGACCGATTATGTCAAAGCCGAAACCTGCACCGAAGCCACAGACCCCTCCTCCGCCTACGCCTCCGACTGAAAGCCCAACAACGCCTGAGCCT
species | Oryza sativa |
transcript | LOC_Os05g08840.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTGTCCTCTTAATATCTGACATGAAGAAGAGAGCTGAAGCACTTGACAG GTCGTGCAGACCGATTATGTCAAAGCCGAAACCTGCACCGAAGCCACAGACEST: gi|86412626|gb|CI067031.1|CI067031
genomic: CCTGTCCTCTTAATATCTGACATGAAGAAGAAAGCTGAAGCACTTGACAGgtttgtgtgt ... tgtttcacagGTCGTGCAGACCGATTATGTCAAAGCCGAAACCTGCACCGAAGCCACAGAC
EST: CCTGTCCTCTTAATATCTGACATGAAGAAGAAAGCTGAAGCACTTGACAG GTCGTGCAGACCGATTATGTCAAAGCCGAAACCTGCACCGAAGCCACAGACEST: gi|86431839|gb|CI085450.1|CI085450
genomic: CCTGTCCTCTTAATATCTGACATGAAGAAGAAAGCTGAAGCACTTGACAGgtttgtgtgt ... tgtttcacagGTCGTGCAGACCGATTATGTCAAAGCCGAAACCTGCACCGAAGCCACAGAC
EST: CCTGTCCTCTTAATATCTGACATGAAGAAGAAAGCTGAAGCACTTGACAG GTCGTGCAGACCGATTATGTCAAAGCCGAAACCTGCACCGAAGCCACAGACEST: gi|86482120|gb|CI124753.1|CI124753
genomic: CCTGTCCTCTTAATATCTGACATGAAGAAGAAAGCTGAAGCACTTGACAGgtttgtgtgt ... tgtttcacagGTCGTGCAGACCGATTATGTCAAAGCCGAAACCTGCACCGAAGCCACAGAC
EST: CCTGTCCTCTTAATATCTGACATGAAGAAGAAAGCTGAAGCACTTGACAG GTCGTGCAGACCGATTATGTCAAAGCCGAAACCTGCACCGAAGCCACAGAC
genomic: CCTGTCCTCTTAATATCTGACATGAAGAAGAAAGCTGAAGCACTTGACAGgtttgtgtgt ... tgtttcacagGTCGTGCAGACCGATTATGTCAAAGCCGAAACCTGCACCGAAGCCACAGAC
gatgttagtttgattcttgtgtctgagtcaactacctctaaaccttgtttcacagGTCGTGCAGACCGATTATGTCAAAGCCGAAACCTGCACCGAAGCCACAGACCCCTCCTCCGCCTACGCCTCCGACTGAAAGCCCAACAACGCCTGAGCCT
ctctaaa putative branch site (score: 12)
ccttgtttc CT-rich tract
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgtgtttatttgctataataacacacctgatgttagtttgattcttgtgtctgagtcaactacctctaaaccttgtttcacagGTCGTGCAGACCGATTATGTCAAAGCCGAAACCTGCACCGAAGCCACAGACCCCTCCTCCGCCTACGCCTCCGACTGAAAGCCCAACAACGCCTGAGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC