1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtagtgcttttatatagaaggtacttaaatacttaaatttacataatccaattccaatataatctattggttgcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAGCAAATGATAAGCGGAAAGAAGCCCTCTCCAAAATGGAAGAGGATGTTG
species | Oryza sativa |
transcript | LOC_Os05g06430.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAG GCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAEST: gi|58683615|gb|CK072302.1|CK072302
genomic: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAGgtagtgcttt ... gcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCA
EST: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAG GCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAEST: gi|163927756|gb|EG710536.1|EG710536
genomic: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAGgtagtgcttt ... gcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCA
EST: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAG GCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAEST: gi|163922917|gb|EG712742.1|EG712742
genomic: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAGgtagtgcttt ... gcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCA
EST: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAG GCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAEST: gi|27577494|gb|CB000189.1|CB000189
genomic: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAGgtagtgcttt ... gcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCA
EST: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAG GCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAEST: gi|58653948|gb|CK042628.1|CK042628
genomic: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAGgtagtgcttt ... gcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCA
EST: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAG GCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAEST: gi|58672427|gb|CK061113.1|CK061113
genomic: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAGgtagtgcttt ... gcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCA
EST: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAG GCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAEST: gi|58676547|gb|CK065234.1|CK065234
genomic: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAGgtagtgcttt ... gcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCA
EST: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAG GCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAEST: gi|86513133|gb|CI155766.1|CI155766
genomic: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAGgtagtgcttt ... gcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCA
EST: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAG GCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAEST: gi|58690891|gb|CK079578.1|CK079578
genomic: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAGgtagtgcttt ... gcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCA
EST: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAG GCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAEST: gi|163925853|gb|EG714953.1|EG714953
genomic: ATGAGAAATGTGGAACCAGCCGTGATTCAAAGGGTCAGCTTACTTCAGAGgtagtgcttt ... gcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCA
EST: AGGGTCAGCTTACTTCAGAG GCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAEST: gi|11026410|gb|AU163011.1|AU163011
genomic: AGGGTCAGCTTACTTCAGAGgtagtgcttt ... gcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCA
EST: GGGTCAGCTTACTTCAGAG GCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCA
genomic: GGGTCAGCTTACTTCAGAGgtagtgcttt ... gcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCA
aatacttaaatttacataatccaattccaatataatctattggttgcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAGCAAATGATAAGCGGAAAGAAGCCCTCTCCAAAATGGAAGAGGATGTTG
ttgcttct CT-rich tract
ttaaatttacataatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgcttttatatagaaggtacttaaatacttaaatttacataatccaattccaatataatctattggttgcttctgtagGCTGGCATTGTCGAAAGCTTGGCTCCTCTTGTGAAGGAGTTCCTTGGTGCAGCAAATGATAAGCGGAAAGAAGCCCTCTCCAAAATGGAAGAGGATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG