1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtacttcacttgcataagtactacaacatactgtacatgtttgtgtaaaatcacatcaagctgactcttaaccatgttgatgttgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATT
species | Oryza sativa |
transcript | LOC_Os05g02310.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|8859734|gb|AU097052.1|AU097052
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88215769|gb|CI215618.1|CI215618
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|2311572|gb|C27727.1|C27727
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATNAGGCCATAAAGCACTCCAT GGNTCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|86873320|gb|CI341545.1|CI341545
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|86884666|gb|CI313045.1|CI313045
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88985884|gb|CI033213.1|CI033213
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88981027|gb|CI021154.1|CI021154
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|8594726|gb|AU093264.1|AU093264
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: ATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGEST: gi|88543309|gb|CI473307.1|CI473307
genomic: ATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCC-ATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTG
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|3761138|gb|C98386.1|C98386
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88959894|gb|CI381772.1|CI381772
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCCTGGAGGGCTTGAGGAGGTAGACTTGTCCEST: gi|88259427|gb|CI363720.1|CI363720
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88275373|gb|CI395224.1|CI395224
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88537310|gb|CI465137.1|CI465137
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88525673|gb|CI452691.1|CI452691
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|33663513|gb|CF294480.1|CF294480
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88237667|gb|CI237516.1|CI237516
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88537571|gb|CI466532.1|CI466532
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88533757|gb|CI460418.1|CI460418
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88542616|gb|CI471955.1|CI471955
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88526755|gb|CI454838.1|CI454838
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: CTGCTTATGAGGCCATAAACCACTCCAT -GATTCTTTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTCTGEST: gi|38482067|gb|CF966128.1|CF966128
genomic: CTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGA-TCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTG
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|3763568|gb|AU030320.1|AU030320
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|87039814|gb|CI194436.1|CI194436
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|86842354|gb|CI335258.1|CI335258
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88544451|gb|CI472550.1|CI472550
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|117243396|gb|CT843443.1|CT843443
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCA-GTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCEST: gi|88375711|gb|CI525805.1|CI525805
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|87039980|gb|CI194602.1|CI194602
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|88537394|gb|CI465225.1|CI465225
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|86883005|gb|CI314249.1|CI314249
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCEST: gi|86603118|gb|CI357482.1|CI357482
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTCCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATCCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTCTGCEST: gi|8956900|gb|BE230703.1|BE230703
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
gtttgtgtaaaatcacatcaagctgactcttaaccatgttgatgttgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATT
tgtaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtacttcacttgcataagtactacaacatactgtacatgtttgtgtaaaatcacatcaagctgactcttaaccatgttgatgttgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT