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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggttttccaatttcggtagctaatgtttggtagtgagaccagtgtcgatgtaaactaaaatctttgtatgtatctttctttcagGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACAT

Basic information

species Oryza sativa
transcript LOC_Os05g01970.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58598830|gb|CK009358.1|CK009358
EST:     CATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAG                         GGTTCAGATTTCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATNN
genomic: CATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGgtggttttcc ... tttctttcagGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagtgagaccagtgtcgatgtaaactaaaatctttgtatgtatctttctttcagGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACAT
                       aactaaa  putative branch site (score: 2)
                                       tgtatctttctttc  putative PPT
                     taaactaaaatcttt  TA-rich tract