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...gttaatctatcaaaatattataacagggtgattttggcatcctcattggacttgaagttctataatattgtaattgcagtaatgttgaaatattttgcagACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTTCAGTCATTGCTTCTTTCTCCTCTTGCTGAAGCTTGTTCCAGAAAGGATC
species | Oryza sativa |
transcript | LOC_Os04g58750.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGTAAGATCTCTGGTGCAAGCATTGGCTCCTCTTCAGAAGGATCTTGAG ACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTTEST: gi|88724708|gb|CI747967.1|CI747967
genomic: ATGTAAGATCTCTGGTGCAAGCATTGGCTCCTCTTCAGAAGGATCTTGAGgtgaatatct ... tattttgcagACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTT
EST: ATGTAAGATCTCTGGTGCAAGCATTGGCTCCTCTTCAGAAGGATCTTGAG ACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTTEST: gi|33796952|gb|CF324339.1|CF324339
genomic: ATGTAAGATCTCTGGTGCAAGCATTGGCTCCTCTTCAGAAGGATCTTGAGgtgaatatct ... tattttgcagACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTT
EST: ATGTAAGATCTCTGGTGCAAGCATTGGCTCCTCTTCAGAAGGATCTTGAG ACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTTEST: gi|88725714|gb|CI748973.1|CI748973
genomic: ATGTAAGATCTCTGGTGCAAGCATTGGCTCCTCTTCAGAAGGATCTTGAGgtgaatatct ... tattttgcagACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTT
EST: ATGTAAGATCTCTGGTGCAAGCATTGGCTCCTCTTCAGAAGGATCTTGAG ACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTTEST: gi|58603429|gb|CK013957.1|CK013957
genomic: ATGTAAGATCTCTGGTGCAAGCATTGGCTCCTCTTCAGAAGGATCTTGAGgtgaatatct ... tattttgcagACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTT
EST: ATGTAAGATCTCTGGTGCAAGCATTGGCTCCTCTTCAGAAGGATCTTGAG ACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTTEST: gi|58656214|gb|CK044894.1|CK044894
genomic: ATGTAAGATCTCTGGTGCAAGCATTGGCTCCTCTTCAGAAGGATCTTGAGgtgaatatct ... tattttgcagACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTT
EST: ATGTAAGATCTCTGGTGCAAGCATTGGCTCCTCTTCAGAAGGATCTTGAG ACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTT
genomic: ATGTAAGATCTCTGGTGCAAGCATTGGCTCCTCTTCAGAAGGATCTTGAGgtgaatatct ... tattttgcagACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTT
ttggacttgaagttctataatattgtaattgcagtaatgttgaaatattttgcagACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTTCAGTCATTGCTTCTTTCTCCTCTTGCTGAAGCTTGTTCCAGAAAGGATC
aagttctataatattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaatctatcaaaatattataacagggtgattttggcatcctcattggacttgaagttctataatattgtaattgcagtaatgttgaaatattttgcagACTCCATCTTATGAACTGATGGATATACCCCGTGGTGGTGCAACATCTGTTCAGTCATTGCTTCTTTCTCCTCTTGCTGAAGCTTGTTCCAGAAAGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - atcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgaa