1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaactgtgattgtcgaacaaatgtcgcgtcatcattttaagttcactctaatcttggttttcttatttactgtctgcctgcttatgtagATGACTTCGATGATTTCTGTTCTCGCGCCACTGAGCTAGTAGATAAAGCCAATGGAGCACCACTCTTCACTGTTGTGCAGTCGGTTCAACCGTCAAAACA
species | Oryza sativa |
transcript | LOC_Os04g58560.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGACCTGATAGATCCGTCATTGGCTATTGGTTTTTACTGCCGTGATAAAG ATGACTTCGATGATTTCTGTTCTCGCGCCACTGAGCTAGTAGATAAAGCCAEST: gi|88225675|gb|CI225591.1|CI225591
genomic: AGACCTGATAGATCCGTCATTGGCTATTGGTTTTTACTGCCGTGATAAAGgtgaactgtg ... gcttatgtagATGACTTCGATGATTTCTGTTCTCGCGCCACTGAGCTAGTAGATAAAGCCA
EST: AGACCTGATAGATCCGTCATTGGCTATTGGTTTTTACTGCCGTGATAAAG ATGACTTCGATGATTTCTGTTCTCGCGCCACTGAGCTAGTAGATAAAGCCAEST: gi|86502285|gb|CI144918.1|CI144918
genomic: AGACCTGATAGATCCGTCATTGGCTATTGGTTTTTACTGCCGTGATAAAGgtgaactgtg ... gcttatgtagATGACTTCGATGATTTCTGTTCTCGCGCCACTGAGCTAGTAGATAAAGCCA
EST: AGACCTGATAGATCCGTCATTGGCTATTGGTTTTTACTGCCGTGATAAAG ATGACTTCGATGATTTCTGTTCTCGCGCCACTGAGCTAGTAGATAAAGCCAEST: gi|88964270|gb|CI045463.1|CI045463
genomic: AGACCTGATAGATCCGTCATTGGCTATTGGTTTTTACTGCCGTGATAAAGgtgaactgtg ... gcttatgtagATGACTTCGATGATTTCTGTTCTCGCGCCACTGAGCTAGTAGATAAAGCCA
EST: ACCTGATAGATCCGTCATTGGCTATTGGTTTTTACTGCCGTGATAAAG ATGACTTCGATGATTTCTGTTCTCGCGCCACTGAGCTAGTAGATAAAGCCA
genomic: ACCTGATAGATCCGTCATTGGCTATTGGTTTTTACTGCCGTGATAAAGgtgaactgtg ... gcttatgtagATGACTTCGATGATTTCTGTTCTCGCGCCACTGAGCTAGTAGATAAAGCCA
ttttaagttcactctaatcttggttttcttatttactgtctgcctgcttatgtagATGACTTCGATGATTTCTGTTCTCGCGCCACTGAGCTAGTAGATAAAGCCAATGGAGCACCACTCTTCACTGTTGTGCAGTCGGTTCAACCGTCAAAACA
ctctaat putative branch site (score: 12)
cctgctt putative PPT
ttttcttatttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaactgtgattgtcgaacaaatgtcgcgtcatcattttaagttcactctaatcttggttttcttatttactgtctgcctgcttatgtagATGACTTCGATGATTTCTGTTCTCGCGCCACTGAGCTAGTAGATAAAGCCAATGGAGCACCACTCTTCACTGTTGTGCAGTCGGTTCAACCGTCAAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA