Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataacacatgttctcaccaatttactataattgagctgaacctgtcgtctgggtttcttatcttaaaatggttcgatgctaatgttctttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAG

Basic information

species Oryza sativa
transcript LOC_Os04g56646.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g56646.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G368908_T03 (Zea mays), 3'ss of exon 5
gtaataacacatgttctcacc-aatttactataattgagctgaacctgtcgtctgggtttcttatcttaaaatggttcgatgctaatgttctttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAG
|||||    ||| || |   |  |||||  |||||||| |||| | | || | |          |||    |  |    ||| |    ||||||  | |||| ||||||||||| ||||||||||| |||||  |||||||||| |||||||||||||| || || || || |||||||| || |||
gtaatcttgcatctttttttctgatttaacataattgacctgatcttttcatat----------tctcggga--gccttatgttgtctttcttttgtacagTGAAAACAAACGACATGATGTTGGTAATATATCTGTCTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAG

upper sequence: LOC_Os04g56646.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G061745_T03 (Zea mays), 3'ss of exon 8
gtaataacacatgttctcaccaatttactataattgagctgaacctgtcgtctgggtttcttatcttaaaatggttcgatgctaatgttctttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAG--------------
|||||    ||| ||    |  |||||  ||||  || || | | | ||     |  | ||||| ||  |   |    ||| |    ||||||  |||||| ||||||||||| ||||||||||| |||||| |||||||||| |||||||| ||||| || || || || || ||||| || |||              
gtaatcttgcatctttcttctgatttaacataacagaccttatcttctca----gaatccttattttgcagcagccttatgtttcctttctttggtgcagTGAAAACAAACGACATGATGTTGGTGATATACCTGTCTTCTCTGATCCGGAGCGTCATTGCGCTTCACAATTTAATCAACAATAAGGTTGATTCATATCT

upper sequence: LOC_Os04g56646.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G061745_T02 (Zea mays), 3'ss of exon 7
gtaataacacatgttctcaccaatttactataattgagctgaacctgtcgtctgggtttcttatcttaaaatggttcgatgctaatgttctttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAG
|||||    ||| ||    |  |||||  ||||  || || | | | ||     |  | ||||| ||  |   |    ||| |    ||||||  |||||| ||||||||||| ||||||||||| |||||| |||||||||| |||||||| ||||| || || || || || ||||| || |||
gtaatcttgcatctttcttctgatttaacataacagaccttatcttctca----gaatccttattttgcagcagccttatgtttcctttctttggtgcagTGAAAACAAACGACATGATGTTGGTGATATACCTGTCTTCTCTGATCCGGAGCGTCATTGCGCTTCACAATTTAATCAACAATAAG

upper sequence: LOC_Os04g56646.1 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv08s0007g01980.t01 (Vitis vinifera), 3'ss of exon 8
gtaataacac-atgttctcaccaatttactataattgagctgaacctgtcgtctgggtttcttatcttaaaatggttcgatgctaatgttctttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAG
|| |   ||  || || |   |    |    ||  |    | | | |||| |||   |||     ||     | | || |||       | ||   |||||| |||||||| |||||||||||||| || ||  | || ||||| ||||| ||||| || || ||||| ||||||||||||||||||
gtgaggccaagatattattttctgcctttggtatct----tcatcatgtcatctaacttttcccactct---ttgatccatgtgtgcccttttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAAGTGTTATAGCTCTCCACAACTTGATCAATAACAAG

upper sequence: LOC_Os04g56646.1 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv02s0025g01490.t01 (Vitis vinifera), 3'ss of exon 8
gtaa-taacacatgttctcaccaatttactataattgagctgaacctgtcgtctgggtttcttatcttaaaatggttcgatgctaatgttctttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAG
|||    | | ||  | |   |    | || ||  |    ||| | ||| | ||    ||    |  |   ||   |   |||   |    ||  ||||||| |||||||| |||||||||||||| || ||  | || ||||| | ||| || || || || ||||| ||||||||||||||||||
gtaggccaaagatagtatattctgccttctgtatct----tgagcatgttggctaacctttcagttctctgatctatatgtgcccgt----ttctctgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCACCCGAAGCGTTATAGCGCTCCACAACTTGATCAATAACAAG

upper sequence: LOC_Os04g56646.1 (Oryza sativa), 3'ss of exon 8
lower sequence: PP1S197_115V6.1 (Physcomitrella patens), 3'ss of exon 8
gtaataacacatgttctcaccaatttactataattgagctgaacctgtcgtctgggtttcttatcttaaaatg-----gttcgatgctaatgttctttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAG
   | || |   |||        |||  | | | || | |  |  ||   |    || ||  |  | |   ||     |||  || ||  ||||  ||  |||||| ||||||||||| ||||||||||| || ||| ||||||| ||||| |||||||| || ||  | || ||| | || |||||||||
---agaatattagttggttttgttttggtttgactgtg-tagatttggttttcatgtctcagaagtcagggtgctcatgttaaatacttgtgttggtta-tgcagTGAAAACAAACGACATGATGTTGGTGATTTACCTGTCTTCCCTTATTCGGAGTGTTATTGCTTTACACAACCTCATAAATAACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86251786|gb|CI018978.1|CI018978
EST:     TAATCTGCTCCCCAATCTCGATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86866140|gb|CI336843.1|CI336843
EST:     TTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88980730|gb|CI022426.1|CI022426
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88438925|gb|CI531105.1|CI531105
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|89197866|gb|CI013856.1|CI013856
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88508110|gb|CI435616.1|CI435616
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88975644|gb|CI021726.1|CI021726
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACCAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86487268|gb|CI129901.1|CI129901
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|29619208|gb|CB624220.1|CB624220
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88509685|gb|CI437191.1|CI437191
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|29619248|gb|CB624260.1|CB624260
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88985211|gb|CI006865.1|CI006865
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86414901|gb|CI069304.1|CI069304
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88995871|gb|CI037176.1|CI037176
EST:     TAATCTGCTCCCCGATCTCGATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACGAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88965771|gb|CI006636.1|CI006636
EST:     AGCCTTTGCAG                         TTAAAACGAACGATATGATGTTGGTCATATACTGGTCTTCTCTTATCCGGA
genomic: AGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86423679|gb|CI062440.1|CI062440
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88505833|gb|CI433339.1|CI433339
EST:     ATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: ATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86594361|gb|CI251233.1|CI251233
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88437424|gb|CI528783.1|CI528783
EST:     CTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: CTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88295971|gb|CI535134.1|CI535134
EST:     TGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|94362834|gb|CI052995.1|CI052995
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88695477|gb|CI737515.1|CI737515
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88245125|gb|CI244974.1|CI244974
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86903357|gb|CI313720.1|CI313720
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGGTTAGTAAAGCCTTGGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTGTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88717102|gb|CI740612.1|CI740612
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86252997|gb|CI057922.1|CI057922
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86835442|gb|CI347899.1|CI347899
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|89168011|gb|CI109215.1|CI109215
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACTAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86876162|gb|CI325628.1|CI325628
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGGTTATTAAAGCC-TTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTGTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88503694|gb|CI431200.1|CI431200
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86873285|gb|CI341510.1|CI341510
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86839715|gb|CI343647.1|CI343647
EST:     AAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: AAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86421022|gb|CI057011.1|CI057011
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86422198|gb|CI059771.1|CI059771
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88270531|gb|CI385789.1|CI385789
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86419860|gb|CI054661.1|CI054661
EST:     AGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: AGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86511450|gb|CI154083.1|CI154083
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88263755|gb|CI366656.1|CI366656
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88273229|gb|CI388685.1|CI388685
EST:     CGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: CGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88958196|gb|CI095715.1|CI095715
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86489123|gb|CI131756.1|CI131756
EST:     CCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: CCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|88464145|gb|CI532080.1|CI532080
EST:     CTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: CTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86426915|gb|CI072012.1|CI072012
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|89174923|gb|CI111121.1|CI111121
EST:     CAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: CAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|29619285|gb|CB624297.1|CB624297
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
EST: gi|86835221|gb|CI346696.1|CI346696
EST:     TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAG                         TTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA
genomic: TAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 58 (upstream exon), 69 (downstream exon)
Score: 44

GATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacac ... tttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcgtctgggtttcttatcttaaaatggttcgatgctaatgttctttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAG
                                  tgctaat  putative branch site (score: 44)
                                        tgttctttcct  CT-rich tract
           tttcttatcttaaaat  TA-rich tract