1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgattcacgaattcatcatctcctttttttagttttatatttccaaggtgttctcgggatatttcatgataaatgcatgaacacatgcatatttctgtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACCTTACAAGATGGGCA
species | Oryza sativa |
transcript | LOC_Os04g54640.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAGAATATGACAAAGTTTTCGGTCAATCGGCAGATCTTTTCACCCTTCAG AGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACEST: gi|88508320|gb|CI435826.1|CI435826
genomic: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacg ... gtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAAC
EST: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAG AGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACEST: gi|38476935|gb|CF961068.1|CF961068
genomic: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacg ... gtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAAC
EST: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAG AGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAEST: gi|88548468|gb|CI476843.1|CI476843
genomic: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacg ... gtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACA
EST: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAG AGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACEST: gi|88472793|gb|CI410064.1|CI410064
genomic: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacg ... gtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAAC
EST: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAG AGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACEST: gi|88281159|gb|CI402357.1|CI402357
genomic: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacg ... gtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAAC
EST: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAG AGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACEST: gi|88975471|gb|CI023722.1|CI023722
genomic: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacg ... gtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAAC
EST: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAG AGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACEST: gi|88521051|gb|CI448705.1|CI448705
genomic: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacg ... gtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAAC
EST: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAG AGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACEST: gi|88470272|gb|CI407543.1|CI407543
genomic: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacg ... gtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAAC
EST: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAG AGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACEST: gi|88510874|gb|CI438380.1|CI438380
genomic: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacg ... gtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAAC
EST: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAG AGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCANCAACAAAACEST: gi|88527421|gb|CI455579.1|CI455579
genomic: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacg ... gtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAAC
EST: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAG AGATTCATAAACCCGACTAAGCCGCCATTAACCAAGGATCAGCAACCAAACEST: gi|88971502|gb|CI017816.1|CI017816
genomic: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacg ... gtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAAC
EST: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAG AGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACEST: gi|88474642|gb|CI411913.1|CI411913
genomic: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacg ... gtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAAC
EST: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAG AGATTCATAAACCGGANTAAGCCGCCATTAACCAAGGATCAGCAACAAAAC
genomic: TAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacg ... gtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAAC
tctcgggatatttcatgataaatgcatgaacacatgcatatttctgtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACCTTACAAGATGGGCA
tttctgt CT-rich tract
atatttcatgataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattcacgaattcatcatctcctttttttagttttatatttccaaggtgttctcgggatatttcatgataaatgcatgaacacatgcatatttctgtgcttttagAGATTCATAAACCGGACTAAGCCGCCATTAACCAAGGATCAGCAACAAAACCTTACAAGATGGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG