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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattttcttatgttcatcaatgtttattgtaacttaagaatatgaagctgctttagtaagtttgtgaatagtaatttgcctcttttctttgctatacagTTACCTCTGTTGTATAAGCACCTTTTTTCTTCTAAATTGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAG

Basic information

species Oryza sativa
transcript LOC_Os04g52690.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675898|gb|CB672173.1|CB672173
EST:     ACGTTGGTGGTCTTGAGGAAGTGAAAAAGGTTATTCTAGATACTATTCAG                         TTACCTCTGTTGTATAAGCACCTTTTTTCTTCTAAATTGGGGAAGCGGTCA
genomic: ACGTTGGTGGTCTTGAGGAAGTGAAAAAGGTTATTCTAGATACTATTCAGgtaaaatttt ... tgctatacagTTACCTCTGTTGTATAAGCACCTTTTTTCTTCTAAATTGGGGAAGCGGTCA
EST: gi|58674677|gb|CK063364.1|CK063364
EST:     ACGTCGGTGGTCTTGAGGAAGTGAAAAAGGTTATTCTAGATACTATTCAG                         TTACCTCTGTTGTATAAGCACCTTTTTTCTTCTAAATTGGGGAAGCGGTCA
genomic: ACGTTGGTGGTCTTGAGGAAGTGAAAAAGGTTATTCTAGATACTATTCAGgtaaaatttt ... tgctatacagTTACCTCTGTTGTATAAGCACCTTTTTTCTTCTAAATTGGGGAAGCGGTCA
EST: gi|27576352|gb|CA999046.1|CA999046
EST:     ACGTTGGTGGTCTTGAGGAAGTGAAAAAGGTTATTCTAGATACTATTCAG                         TTACCTCTGTTGTATAAGCACCTTTTTTCTTCTAAATTGGGGAAGCGGTCA
genomic: ACGTTGGTGGTCTTGAGGAAGTGAAAAAGGTTATTCTAGATACTATTCAGgtaaaatttt ... tgctatacagTTACCTCTGTTGTATAAGCACCTTTTTTCTTCTAAATTGGGGAAGCGGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagctgctttagtaagtttgtgaatagtaatttgcctcttttctttgctatacagTTACCTCTGTTGTATAAGCACCTTTTTTCTTCTAAATTGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAG
                              tttgcctcttttcttt  CT-rich tract
                      aatagtaattt  TA-rich tract