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...catcttagtaagctgcaaataattatgcagtgtaattttatttatttgaaaaaaagaataaatctgatcatgtctgtttctgttttgtcctctgttgtagTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGAT
species | Oryza sativa |
transcript | LOC_Os04g47120.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATT TGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCAEST: gi|58691473|gb|CK080160.1|CK080160
genomic: AGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTgtaagttctc ... tctgttgtagTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCA
EST: AGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATT TGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCA
genomic: AGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTgtaagttctc ... tctgttgtagTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCA
ttgaaaaaaagaataaatctgatcatgtctgtttctgttttgtcctctgttgtagTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGAT
atctgat putative branch site (score: 30)
tctgtttctgttttgt putative PPT
aaaaagaataaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcttagtaagctgcaaataattatgcagtgtaattttatttatttgaaaaaaagaataaatctgatcatgtctgtttctgttttgtcctctgttgtagTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - agctgca
- - - - - - - - - - - ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataaa