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gtctggcattcttttcatgcaaaatctattgcaccatctgccaaatgaacatgaatttaccgatgttatgcttcttacataaattgtttggtcgttatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAG
species | Oryza sativa |
transcript | LOC_Os04g45670.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTEST: gi|88549526|gb|CI479421.1|CI479421
genomic: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
EST: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTEST: gi|15856264|gb|BI809076.1|BI809076
genomic: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
EST: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTEST: gi|88831791|gb|CI369473.1|CI369473
genomic: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
EST: TCAGTGACATCTGTAGATTTCTTCCTAGGAGAG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTEST: gi|88472374|gb|CI409645.1|CI409645
genomic: TCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
EST: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTEST: gi|33684003|gb|CF312242.1|CF312242
genomic: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
EST: CCTCCCCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTEST: gi|88554670|gb|CI484862.1|CI484862
genomic: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
EST: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTEST: gi|88838573|gb|CI375121.1|CI375121
genomic: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
EST: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGGCEST: gi|88248529|gb|CI248378.1|CI248378
genomic: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCA-GC
EST: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGGG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTEST: gi|88533099|gb|CI460635.1|CI460635
genomic: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
EST: GACATCTGTAGATTTCTTCCTAGGAGGG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTEST: gi|112785829|gb|EE591501.1|EE591501
genomic: GACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
EST: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTEST: gi|313081046|gb|HO213632.1|HO213632
genomic: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
EST: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTEST: gi|86414039|gb|CI068246.1|CI068246
genomic: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
EST: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTEST: gi|89180460|gb|CI044739.1|CI044739
genomic: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
EST: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTEST: gi|2276033|gb|C25010.1|C25010
genomic: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
EST: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAG GCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
genomic: CCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGgtctggcatt ... tatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCT
atgaatttaccgatgttatgcttcttacataaattgtttggtcgttatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAG
ttcttac putative branch site (score: 24)
ttacataaattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctggcattcttttcatgcaaaatctattgcaccatctgccaaatgaacatgaatttaccgatgttatgcttcttacataaattgtttggtcgttatgatgcagGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA