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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaattcagatcatcagtgctatagctcctttctgtatcctgtttagctgattaacatttttttgaggtgtgtgtatgcgcgtgcagGTATCGCATTGAACAAGAGCTTGGAACCGAGATAAAACCAATACCACCTCAGATAGACCGAGCAATATATTGCCAATAGTTATCTGACAGAACGATCTTG

Basic information

species Oryza sativa
transcript LOC_Os04g45040.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58663869|gb|CK052555.1|CK052555
EST:     CACCTTGGTTTGGCTGTGAATTTGATCACCTATGAGGACCGTTTTAACTT                         GTATCGCATTGAACAAGAGCTTGGAACCGAGATAAAACCAATACCACCTCA
genomic: CACCTTGGTTTGGCTGTGAATTTGATCACCTATGAGGACCGTTTTAACTTgtatgtaatt ... gcgcgtgcagGTATCGCATTGAACAAGAGCTTGGAACCGAGATAAAACCAATACCACCTCA
EST: gi|55411565|gb|CV723941.1|CV723941
EST:     CACCTTGGTTTGGCTGTGAATTTGATCACCTATGAGGACCGTTTTAACTT                         GTATCGCATTGAACAAGAGCTTGGAACCGAGATAAAAC
genomic: CACCTTGGTTTGGCTGTGAATTTGATCACCTATGAGGACCGTTTTAACTTgtatgtaatt ... gcgcgtgcagGTATCGCATTGAACAAGAGCTTGGAACCGAGATAAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtatcctgtttagctgattaacatttttttgaggtgtgtgtatgcgcgtgcagGTATCGCATTGAACAAGAGCTTGGAACCGAGATAAAACCAATACCACCTCAGATAGACCGAGCAATATATTGCCAATAGTTATCTGACAGAACGATCTTG
                 gattaac  putative branch site (score: 2)
                tgattaacattttttt  TA-rich tract