1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagcagagtatttgtcagaaacagataagctatgcagaagatgttactgatgctgtcaatctgcttcagGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGG
species | Oryza sativa |
transcript | LOC_Os04g41910.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAG GTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAEST: gi|58592254|gb|CF990562.1|CF990562
genomic: TGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAGgtaagcagag ... tctgcttcagGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCA
EST: TGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATGGGAGCAGAAAG GTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAEST: gi|29616209|gb|CB621221.1|CB621221
genomic: TGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAGgtaagcagag ... tctgcttcagGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCA
EST: TAGCCCGGCCAAATTTGAGCAGAAAG GGGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAEST: gi|89190588|gb|CI392441.1|CI392441
genomic: TAGCCCGGCCAAATTTGAGCAGAAAGgtaagcagag ... tctgcttcagGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCA
EST: TGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAG GTGATGTTTTCATTTCTAAGAAGACAGATAAGEST: gi|88502487|gb|CI429993.1|CI429993
genomic: TGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAGgtaagcagag ... tctgcttcagGTGATGTTTTCATTTCTAAGAAGACAGATAAG
EST: TGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAG GTGATGTTTTCATTTCTAAGAAGACAGATAAGCEST: gi|29636734|gb|CB641743.1|CB641743
genomic: TGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAGgtaagcagag ... tctgcttcagGTGATGTTTTCATTTCTAAGAAGACAGATAAGC
EST: CTGTTAGCCCGGCCAAATTTGAGCAGAAAG GTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAEST: gi|29676261|gb|CB672536.1|CB672536
genomic: CTGTTAGCCCGGCCAAATTTGAGCAGAAAGgtaagcagag ... tctgcttcagGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCA
EST: TGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAG GTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCA
genomic: TGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAGgtaagcagag ... tctgcttcagGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCA
tcagaaacagataagctatgcagaagatgttactgatgctgtcaatctgcttcagGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGG
tactgat putative branch site (score: 2)
tctgcttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcagagtatttgtcagaaacagataagctatgcagaagatgttactgatgctgtcaatctgcttcagGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG