1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcattttgtgctttgcattttggtggtaacttaaatgctgcttaagtgcttggagagttatttgaactcactacagctgttgtctgtgacacgtctgcagCTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTTGTACCTAAGTGACTAAATTTTGTGGAAGGTCTTCAAGAGAGTTCACCTG
species | Oryza sativa |
transcript | LOC_Os04g41100.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTTTCACCAGGAAATCAATGGACAGTAATACAACTTGAAAG CTTAAGCTNTGGCTGGTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTTEST: gi|29626550|gb|CB631561.1|CB631561
genomic: TTTTCACCAGGAAATCAATGGACAGTAATACAACTTGAAAGgtaaatatat ... acgtctgcagCTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTT
EST: GCCTTTTGCTTTTCACCAGGAAATCAATGGACAGTAATACAACTTGAAAG CTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTTEST: gi|87021463|gb|CI274070.1|CI274070
genomic: GCCTTTTGCTTTTCACCAGGAAATCAATGGACAGTAATACAACTTGAAAGgtaaatatat ... acgtctgcagCTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTT
EST: GCCTTTTGCTTTTCACCAGGAAATCAATGGACAGTAATACAACTTGAAAG CTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTTEST: gi|27920887|gb|CB096695.1|CB096695
genomic: GCCTTTTGCTTTTCACCAGGAAATCAATGGACAGTAATACAACTTGAAAGgtaaatatat ... acgtctgcagCTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTT
EST: GCCTTTTGCTTTTCACCAGGAAATCAATGGACAGTAATACAACTTGAAAG CTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTTEST: gi|218495458|gb|FG950145.1|FG950145
genomic: GCCTTTTGCTTTTCACCAGGAAATCAATGGACAGTAATACAACTTGAAAGgtaaatatat ... acgtctgcagCTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTT
EST: GCCTTTTGCTTTTCACCAGGAAATCAATGGACAGTAATACAACTTGAAAG CTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTTEST: gi|88286911|gb|CI520221.1|CI520221
genomic: GCCTTTTGCTTTTCACCAGGAAATCAATGGACAGTAATACAACTTGAAAGgtaaatatat ... acgtctgcagCTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTT
EST: GGACAGTAATACAACTTGAAAG CTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTT
genomic: GGACAGTAATACAACTTGAAAGgtaaatatat ... acgtctgcagCTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTT
gtgcttggagagttatttgaactcactacagctgttgtctgtgacacgtctgcagCTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTTGTACCTAAGTGACTAAATTTTGTGGAAGGTCTTCAAGAGAGTTCACCTG
aactcac putative branch site (score: 2)
ttatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattttgtgctttgcattttggtggtaacttaaatgctgcttaagtgcttggagagttatttgaactcactacagctgttgtctgtgacacgtctgcagCTTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCCCTCAGCTTGTTGTACCTAAGTGACTAAATTTTGTGGAAGGTCTTCAAGAGAGTTCACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA