1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtgcttctttaacttaagttctgttgaaatacaagagaattcttaccatagctcaggaaggcataattctaagtcaatggtttcccggcctgttttcagGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT
species | Oryza sativa |
transcript | LOC_Os04g39270.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATT GTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAGEST: gi|4714825|gb|AU055942.1|AU055942
genomic: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTgtaagtgctt ... ctgttttcagGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAG
EST: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATT GTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAGEST: gi|29616384|gb|CB621396.1|CB621396
genomic: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTgtaagtgctt ... ctgttttcagGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAG
EST: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATT GTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAGEST: gi|4714826|gb|AU055943.1|AU055943
genomic: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTgtaagtgctt ... ctgttttcagGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAG
EST: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATT GTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAGEST: gi|88986358|gb|CI033589.1|CI033589
genomic: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTgtaagtgctt ... ctgttttcagGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAG
EST: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATT GTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAGEST: gi|86850836|gb|CI338812.1|CI338812
genomic: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTgtaagtgctt ... ctgttttcagGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAG
EST: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGGAAGGCATAATT GTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAGEST: gi|29663297|gb|CB659572.1|CB659572
genomic: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTgtaagtgctt ... ctgttttcagGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAG
EST: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATT GTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAGEST: gi|86849316|gb|CI297783.1|CI297783
genomic: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTgtaagtgctt ... ctgttttcagGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAG
EST: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATT GTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAGEST: gi|29615583|gb|CB620595.1|CB620595
genomic: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTgtaagtgctt ... ctgttttcagGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAG
EST: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATT GTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAG
genomic: ATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTgtaagtgctt ... ctgttttcagGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAG
accatagctcaggaaggcataattctaagtcaatggtttcccggcctgttttcagGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT
ttcttac putative branch site (score: 32)
cctgttttc putative PPT
ataattctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgcttctttaacttaagttctgttgaaatacaagagaattcttaccatagctcaggaaggcataattctaagtcaatggtttcccggcctgttttcagGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTCAGAATGCTGGGGTTAAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG