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gtatgctttcactttgtagctatagttttccaagtaacttgtgaatgccaagctgatccaatctgatcttgcagGTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCAGACAGCTTTTCTGAGGAAGGAAAAAGCTTCTTGCAGATGTGCTTAAAAC
species | Oryza sativa |
transcript | LOC_Os04g35700.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGATGGG GTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCAEST: gi|33684300|gb|CF312539.1|CF312539
genomic: CTATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGAGGGGgtatgctttc ... gatcttgcagGTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCA
EST: TATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGAAGGGG GTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCEST: gi|29666846|gb|CB663121.1|CB663121
genomic: TATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGA-GGGGgtatgctttc ... gatcttgcagGTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCC
EST: ATTGAAATGGCAACGGCAAAACCTCCTTGGGCATAAATACGAGGGG GTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCAEST: gi|313081071|gb|HO213657.1|HO213657
genomic: ATTGAAATGGCAACGGCAAAACCTCCTT-GGCATAAATACGAGGGGgtatgctttc ... gatcttgcagGTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCA
EST: CTATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGAGGGG GTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCAEST: gi|58668178|gb|CK056864.1|CK056864
genomic: CTATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGAGGGGgtatgctttc ... gatcttgcagGTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCA
EST: CTATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGAGGGG GTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCAEST: gi|109974311|gb|DT806838.1|DT806838
genomic: CTATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGAGGGGgtatgctttc ... gatcttgcagGTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCA
EST: ATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATGCGAGGGG GTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCAEST: gi|29666845|gb|CB663120.1|CB663120
genomic: ATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGAGGGGgtatgctttc ... gatcttgcagGTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCA
EST: CTATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGAGGGG GTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCAEST: gi|29629684|gb|CB634693.1|CB634693
genomic: CTATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGAGGGGgtatgctttc ... gatcttgcagGTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCA
EST: CTATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGAGGGG GTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCA
genomic: CTATTATTGAAATGGCAACGGCAAAACCTCCTTGGCATAAATACGAGGGGgtatgctttc ... gatcttgcagGTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttcactttgtagctatagttttccaagtaacttgtgaatgccaagctgatccaatctgatcttgcagGTAGCTGCTATATTTAAGATCGCAAACAGTAAAGAGATACCTGAAATCCCAGACAGCTTTTCTGAGGAAGGAAAAAGCTTCTTGCAGATGTGCTTAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG