1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aatactaaatagttgtgcaaaacaattgtcagagcatgggaaatgtggtcctgttcactatgttttagcaaacctgtcatttctggcatggttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGA
species | Oryza sativa |
transcript | LOC_Os04g32650.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAG GTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCEST: gi|88220982|gb|CI220938.1|CI220938
genomic: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
EST: AGCAGCAGGGATTTCTCACATGATTGATATGACAG GTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCGCEST: gi|86416118|gb|CI030129.1|CI030129
genomic: AGCAGCAGGGATTTCTCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
EST: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAG GTAACACTATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCEST: gi|218493281|gb|FG957986.1|FG957986
genomic: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
EST: CTCACATAATTGATATGACAG GTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCEST: gi|29624770|gb|CB629781.1|CB629781
genomic: CTCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
EST: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAG GTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCEST: gi|86426089|gb|CI071186.1|CI071186
genomic: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
EST: CTCACATAATTGATATGACAG GTAACACTATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCEST: gi|86425972|gb|CI071069.1|CI071069
genomic: CTCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
EST: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAG GTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCEST: gi|29617709|gb|CB622721.1|CB622721
genomic: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
EST: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAG GTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCEST: gi|86253665|gb|CI014298.1|CI014298
genomic: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
EST: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAG GTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCEST: gi|109712894|gb|CI105502.1|CI105502
genomic: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
EST: GGATTTCTCACATAATTGATATGACAG GTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCTCEST: gi|88219212|gb|CI220485.1|CI220485
genomic: GGATTTCTCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
EST: TCACATAATTGATATGACAG GTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCTCEST: gi|29639396|gb|CB644405.1|CB644405
genomic: TCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
EST: TTTGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAG GTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCEST: gi|89198865|gb|CI003602.1|CI003602
genomic: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
EST: ATTTCTCACATAATTGATATGACAG GTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCEST: gi|29658006|gb|CB654281.1|CB654281
genomic: ATTTCTCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
EST: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAG GTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
genomic: TTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGgtacactatt ... gttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCC
tggtcctgttcactatgttttagcaaacctgtcatttctggcatggttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGA
tatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatactaaatagttgtgcaaaacaattgtcagagcatgggaaatgtggtcctgttcactatgttttagcaaacctgtcatttctggcatggttgttgcagGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGA
- - - - - -gttgtgc
- - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - -gagcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcatg