1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagatcaactttcatcatcaataggttgcacagatttttttttttacaggtacaagcatatctttaaccattttaatttgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCACAAAACACATTTGCAATGCTGACCACATTTAATGAAGTTGACAT
species | Oryza sativa |
transcript | LOC_Os04g32330.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAACCTCCCCTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCAEST: gi|33795334|gb|CF323538.1|CF323538
genomic: AAACCTCCCCTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGGgtaagatcaa ... taatttgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCA
EST: AAACCTCCCCTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGG GTGCCAATGCCAAGGCTCANGAAGCGTATTGCAAACCGTTTGAAGGATTCAEST: gi|33794308|gb|CF323041.1|CF323041
genomic: AAACCTCCCCTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGGgtaagatcaa ... taatttgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCA
EST: AAACCTCCCCTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCAEST: gi|218479259|gb|FG949034.1|FG949034
genomic: AAACCTCCCCTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGGgtaagatcaa ... taatttgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCA
EST: AAACCTCCACTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGG GTGCCAATGCCAEST: gi|5701685|gb|AU062775.2|AU062775
genomic: AAACCTCCCCTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGGgtaagatcaa ... taatttgcagGTGCCAATGCCA
EST: AAACCTCCCCTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCAEST: gi|55435262|gb|CV730762.1|CV730762
genomic: AAACCTCCCCTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGGgtaagatcaa ... taatttgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCA
EST: AAACCTCCCCTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCAEST: gi|5443721|gb|AU062434.2|AU062434
genomic: AAACCTCCCCTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGGgtaagatcaa ... taatttgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCA
EST: AAACCTCCCCTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCA
genomic: AAACCTCCCCTACAGAACCACAGCTCCCTCCAAAAGAACGAGAACGGAGGgtaagatcaa ... taatttgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCA
cacagatttttttttttacaggtacaagcatatctttaaccattttaatttgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCACAAAACACATTTGCAATGCTGACCACATTTAATGAAGTTGACAT
ttttaat putative branch site (score: 50)
ccatttt CT-rich tract
atatctttaaccattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatcaactttcatcatcaataggttgcacagatttttttttttacaggtacaagcatatctttaaccattttaatttgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTTTGAAGGATTCACAAAACACATTTGCAATGCTGACCACATTTAATGAAGTTGACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG