1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagggttttataccacatatccacacacacacacacatattttccctcttttattctgagtaatcactaagctcttttcaaagGTTTTACAAGGCTCTTCCAGCCGGATAAACCCGTGACGAAAGGACAAGTGGCTCTTGCACTTTCAACTGGTGATTCTGCTGATGTGGTTATGGAGGAGCT
species | Oryza sativa |
transcript | LOC_Os03g64400.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTGGCTGACTTGGATGCTGGAGACCAGAGCATTACTGCTCTTGCATTTG GTTTTACAAGGCTCTTCCAGCCGGATAAACCCGTGACGAAAGGACAAGTGGEST: gi|29682015|gb|CB678290.1|CB678290
genomic: GGTGGCTGACTTGGATGCTGGAGACCAGAGCATTACAGCTCTTGCATTTGgtagggtttt ... cttttcaaagGTTTTACAAGGCTCTTCCAGCCGGATAAACCCGTGACGAAAGGACAAGTGG
EST: GGTGGCTGACTTGGATGCTGGAGACCAGAGCATTACAGCTCTTGCATTTG GTTTTACAAGGCTCTTCCAGCCGGATAAACCCGTGACGAAAGGACAAGTGGEST: gi|86596715|gb|CI286628.1|CI286628
genomic: GGTGGCTGACTTGGATGCTGGAGACCAGAGCATTACAGCTCTTGCATTTGgtagggtttt ... cttttcaaagGTTTTACAAGGCTCTTCCAGCCGGATAAACCCGTGACGAAAGGACAAGTGG
EST: GGTGGCTGACTTGGATGCTGGAGACCAGAGCATTACAGCTCTTGCATTTG GTTTTACAAGGCTCTTCCAGCCGGATAAACCCGTGACGAAAGGACAAGTGG
genomic: GGTGGCTGACTTGGATGCTGGAGACCAGAGCATTACAGCTCTTGCATTTGgtagggtttt ... cttttcaaagGTTTTACAAGGCTCTTCCAGCCGGATAAACCCGTGACGAAAGGACAAGTGG
acacacacatattttccctcttttattctgagtaatcactaagctcttttcaaagGTTTTACAAGGCTCTTCCAGCCGGATAAACCCGTGACGAAAGGACAAGTGGCTCTTGCACTTTCAACTGGTGATTCTGCTGATGTGGTTATGGAGGAGCT
ctcttttc CT-rich tract
acatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagggttttataccacatatccacacacacacacacatattttccctcttttattctgagtaatcactaagctcttttcaaagGTTTTACAAGGCTCTTCCAGCCGGATAAACCCGTGACGAAAGGACAAGTGGCTCTTGCACTTTCAACTGGTGATTCTGCTGATGTGGTTATGGAGGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT