1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagaaatgaaaagattcttatccttctaagttggtataaaagaccagctggttgttctgatgttaaaactttctgtgggcagTCTATGTACAAAGCTTCTGGATATATGGACGTTGATAAAATAAATGCAGCTGCTTGGCCCGCTTTGGTGGCTGACTTGGATGCTGGAGACCAGAGCATTA
species | Oryza sativa |
transcript | LOC_Os03g64400.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTGGAAGATGGCTTCGGATAAAAGGCAATTACCTGAAGTGGACAAAACT TCTATGTACAAAGCTTCTGGATATATGEST: gi|58669049|gb|CK057735.1|CK057735
genomic: GTTGGAAGATGGCTTTGGATAAAAGGCAATTACCTGAAGTGGACAAAACTgtgagaaatg ... ctgtgggcagTCTATGTACAAAGCTTCTGGATATATG
EST: GTTGGAAGATGGCTTTGGATAAAAGGCAATTACCTGAAGTGGACAAAACT TCTATGTACAAAGCTTCTGGATATATGGACGTTGATAAAATAAATGCAGCTEST: gi|29682015|gb|CB678290.1|CB678290
genomic: GTTGGAAGATGGCTTTGGATAAAAGGCAATTACCTGAAGTGGACAAAACTgtgagaaatg ... ctgtgggcagTCTATGTACAAAGCTTCTGGATATATGGACGTTGATAAAATAAATGCAGCT
EST: ATAAAAGGCAATTACCTTAAGAGGACAAAACT TCTATGTACAAAGCTTCTGGATATATGGACGTTGATAAAATAAATGCAGCT
genomic: ATAAAAGGCAATTACCTGAAGTGGACAAAACTgtgagaaatg ... ctgtgggcagTCTATGTACAAAGCTTCTGGATATATGGACGTTGATAAAATAAATGCAGCT
aagttggtataaaagaccagctggttgttctgatgttaaaactttctgtgggcagTCTATGTACAAAGCTTCTGGATATATGGACGTTGATAAAATAAATGCAGCTGCTTGGCCCGCTTTGGTGGCTGACTTGGATGCTGGAGACCAGAGCATTA
ttctgat putative branch site (score: 3)
ctttctgt putative PPT
ttaaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaaatgaaaagattcttatccttctaagttggtataaaagaccagctggttgttctgatgttaaaactttctgtgggcagTCTATGTACAAAGCTTCTGGATATATGGACGTTGATAAAATAAATGCAGCTGCTTGGCCCGCTTTGGTGGCTGACTTGGATGCTGGAGACCAGAGCATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA