1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtaacttcattgttcttagttagtttgcatagtggattgtactttttcaatagatgtgtatctaatgtgtttctgttcattttttccttaaaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG
species | Oryza sativa |
transcript | LOC_Os03g64219.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGATACTTGGTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGEST: gi|29671297|gb|CB667572.1|CB667572
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGEST: gi|88519032|gb|CI446686.1|CI446686
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGEST: gi|88840178|gb|CI079632.1|CI079632
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGEST: gi|33681506|gb|CF309745.1|CF309745
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGEST: gi|87019141|gb|CI297342.1|CI297342
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG TTATATGCTTGAGTTTTTGGGCTGAGEST: gi|88842564|gb|CI081820.1|CI081820
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAG
EST: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGEST: gi|86418296|gb|CI032505.1|CI032505
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGEST: gi|88514108|gb|CI441614.1|CI441614
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGEST: gi|88840177|gb|CI079631.1|CI079631
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
ttcaatagatgtgtatctaatgtgtttctgttcattttttccttaaaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG
atctaat putative branch site (score: 3)
attttttccttaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttcattgttcttagttagtttgcatagtggattgtactttttcaatagatgtgtatctaatgtgtttctgttcattttttccttaaaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - -ttgttct
- - - - - - - - - - - - ttgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtatc