1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacgttatgttgctttcaggattacaaattatcatggtttttaatgttctttctaattcctacttttgctgtttggatgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTGTGGGAATTCTTTAAAGATGAATATGCGAATGAGAAGAATTTTCTCGGA
species | Oryza sativa |
transcript | LOC_Os03g63430.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCG GTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTEST: gi|2311390|gb|C27545.1|C27545
genomic: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
EST: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCG GTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTEST: gi|29664786|gb|CB661061.1|CB661061
genomic: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
EST: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCG GTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTEST: gi|5002921|gb|AU068030.1|AU068030
genomic: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
EST: ACACTCGAGGCCAAAAATCTCTCCGAGATNCCAAAATTTCCG GTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTEST: gi|29639942|gb|CB644951.1|CB644951
genomic: ACACTCGAAGACAAAAATCTCTCCGAGATACC-AAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCT
EST: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCG GTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTEST: gi|4715022|gb|AU056139.1|AU056139
genomic: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
EST: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCG GTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTEST: gi|29678375|gb|CB674650.1|CB674650
genomic: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
EST: GATACCAAATTTCCG GTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTEST: gi|5803423|gb|AI978393.1|AI978393
genomic: GATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
EST: CTCAATGCCACACTCGAAGACAAAAATCTCTCTGAGATACCAAATTTCCG GTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTEST: gi|29645308|gb|CB650315.1|CB650315
genomic: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
EST: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCG GTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTEST: gi|29658197|gb|CB654472.1|CB654472
genomic: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
EST: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCG GTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTEST: gi|6799243|gb|AU082194.1|AU082194
genomic: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
EST: GCCACACTCGAAGCCAAAAATCTCTCCCGAGATNCCAAATTTCCG GTTACTGTTGAAGCAACCTTGTAACCATGNAGGTGATTCAGTGGACAAGCTEST: gi|33797492|gb|CF324606.1|CF324606
genomic: GCCACACTCGAAGACAAAAATCTCT-CCGAGATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAA-CTTGTAACCATGGAGGTGATTCAGTGGACAAGCT
EST: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCG GTTACTGCTGAAGCAACTTGTA-CCATGGAGGTGATTCAGTGGACAAGCTTEST: gi|300215653|gb|HO088279.1|HO088279
genomic: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
EST: CTCAATGCCACACTCGAAGACAAAAATCTCTCTGAGATACCAAATTTCCG GTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTEST: gi|29637545|gb|CB642554.1|CB642554
genomic: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
EST: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCG GTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTEST: gi|29620777|gb|CB625788.1|CB625788
genomic: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
EST: CTCAATGCCACACTCGAAGACAAAAATCTCTCTGAGATACCAAATTTCCG GTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
genomic: CTCAATGCCACACTCGAAGACAAAAATCTCTCCGAGATACCAAATTTCCGgtacgttatg ... atgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTT
tcatggtttttaatgttctttctaattcctacttttgctgtttggatgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTGTGGGAATTCTTTAAAGATGAATATGCGAATGAGAAGAATTTTCTCGGA
ttctaat putative branch site (score: 2)
tttttaatgttctttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttatgttgctttcaggattacaaattatcatggtttttaatgttctttctaattcctacttttgctgtttggatgggaatagGTTACTGCTGAAGCAACTTGTAACCATGGAGGTGATTCAGTGGACAAGCTTGTGGGAATTCTTTAAAGATGAATATGCGAATGAGAAGAATTTTCTCGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG