1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgggtgtatataattttttttataaaagtaatgctggaaagttctttttgttctgtcttatcatgtactcatctgattgtgttattgtgtaattttgcagAAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACAGGTCAAAGCCTGACATCTATCTTCCAGAGCTCTCAAACTTCCTTGGATG
species | Oryza sativa |
transcript | LOC_Os03g61710.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTTTGCTGGAAAAGAGGGTTCTTCTGATCCTGGAGTTGCCGTGAAG AAACTCTTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACAEST: gi|58665498|gb|CK054184.1|CK054184
genomic: CTTTTGCTGGAAAAGAGGGTTCTTCTGATCCTGGAGTTGCCGTGAAGgtacaaaatt ... aattttgcagAAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACA
EST: TCTCTTTTGCTGGAAAAGAGGGTTCTTCTGATCCTGGAGTTGCCGTGAAG AAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACAEST: gi|218499430|gb|FG950945.1|FG950945
genomic: TCTCTTTTGCTGGAAAAGAGGGTTCTTCTGATCCTGGAGTTGCCGTGAAGgtacaaaatt ... aattttgcagAAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACA
EST: TCTCTTTTGCTGGAAAAGAGGGTTCTTCTGATCCTGGAGTTGCCGTGAAG AAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACAEST: gi|38565696|gb|CK085149.1|CK085149
genomic: TCTCTTTTGCTGGAAAAGAGGGTTCTTCTGATCCTGGAGTTGCCGTGAAGgtacaaaatt ... aattttgcagAAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACA
EST: CTTTTGCTGGAAAAGAGGGTTCTTCTGATCCTGGAGTTGCCGTGAAG AAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACAEST: gi|38565610|gb|CK085063.1|CK085063
genomic: CTTTTGCTGGAAAAGAGGGTTCTTCTGATCCTGGAGTTGCCGTGAAGgtacaaaatt ... aattttgcagAAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACA
EST: CTTTTGCTGGAAAAGAGGGTTCTTCTGATCCTGGAGTTGCCGTGAAG AAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACAEST: gi|38565704|gb|CK085157.1|CK085157
genomic: CTTTTGCTGGAAAAGAGGGTTCTTCTGATCCTGGAGTTGCCGTGAAGgtacaaaatt ... aattttgcagAAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACA
EST: CTTTTGCTGGAAAAGAGGGTTCTTCTGATCCTGGAGTTGCCGTGAAG AAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACA
genomic: CTTTTGCTGGAAAAGAGGGTTCTTCTGATCCTGGAGTTGCCGTGAAGgtacaaaatt ... aattttgcagAAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACA
ttttgttctgtcttatcatgtactcatctgattgtgttattgtgtaattttgcagAAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACAGGTCAAAGCCTGACATCTATCTTCCAGAGCTCTCAAACTTCCTTGGATG
atctgat putative branch site (score: 15)
ttattgtgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggtgtatataattttttttataaaagtaatgctggaaagttctttttgttctgtcttatcatgtactcatctgattgtgttattgtgtaattttgcagAAACTATTACATGAAGAATCATATACAACAGAAGAAATAGAGAAAATTACAGGTCAAAGCCTGACATCTATCTTCCAGAGCTCTCAAACTTCCTTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - -aatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg