1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cttctctttgcttcgtttggataattaggacatgttcactgaaaatcctcacaaatacaatatattctcaccataagtgctgttgattttatcaatctagGTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAGTCATTGCAGCAGATATCAATGATGATGGGAAAATCGAGATGGTCACTGC
species | Oryza sativa |
transcript | LOC_Os03g61050.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCGTG GTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAGEST: gi|426223|gb|D22085.1|D22085
genomic: TATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCGTGgtaaattctt ... atcaatctagGTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAG
EST: TGGCTTGTTTTATGTTATCGATCATCGTG GTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAGEST: gi|29616172|gb|CB621184.1|CB621184
genomic: TGGCTTGTTTTATGTTATCGATCATCGTGgtaaattctt ... atcaatctagGTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAG
EST: TATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCGTG GTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAG
genomic: TATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCGTGgtaaattctt ... atcaatctagGTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAG
tcctcacaaatacaatatattctcaccataagtgctgttgattttatcaatctagGTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAGTCATTGCAGCAGATATCAATGATGATGGGAAAATCGAGATGGTCACTGC
ttttatc CT-rich tract
acaaatacaatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctctttgcttcgtttggataattaggacatgttcactgaaaatcctcacaaatacaatatattctcaccataagtgctgttgattttatcaatctagGTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAGTCATTGCAGCAGATATCAATGATGATGGGAAAATCGAGATGGTCACTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - -ttgcttc
- - - - - - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - acaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt