1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttggctggtccaagtttttttaacgtgaaggttttccatgttttcgcactgctcccgttcatatctgacccataccttaaaaatttggtgtatataacagGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCAAGAAACATGGAGACAGTGCTTTTCAATCCAAGGATTTTGCGACTGCAG
species | Oryza sativa |
transcript | LOC_Os03g61010.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAG GTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCEST: gi|58672106|gb|CK060792.1|CK060792
genomic: AGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAGgtattaactt ... tatataacagGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTC
EST: GCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAG GTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCEST: gi|88340336|gb|CI652685.1|CI652685
genomic: GCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAGgtattaactt ... tatataacagGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTC
EST: AGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAG GTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCEST: gi|87025987|gb|CI257145.1|CI257145
genomic: AGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAGgtattaactt ... tatataacagGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTC
EST: AGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAG GTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCEST: gi|87015280|gb|CI275470.1|CI275470
genomic: AGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAGgtattaactt ... tatataacagGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTC
EST: AGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAG GTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCEST: gi|88227909|gb|CI227389.1|CI227389
genomic: AGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAGgtattaactt ... tatataacagGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTC
EST: GAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAG GTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCEST: gi|58668790|gb|CK057476.1|CK057476
genomic: GAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAGgtattaactt ... tatataacagGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTC
EST: GAGCAACATTCGAG GTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTC
genomic: GAGCAACATTCGAGgtattaactt ... tatataacagGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTC
gcactgctcccgttcatatctgacccataccttaaaaatttggtgtatataacagGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCAAGAAACATGGAGACAGTGCTTTTCAATCCAAGGATTTTGCGACTGCAG
atctgac putative branch site (score: 16)
ttaaaaatttggtgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggctggtccaagtttttttaacgtgaaggttttccatgttttcgcactgctcccgttcatatctgacccataccttaaaaatttggtgtatataacagGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCAAGAAACATGGAGACAGTGCTTTTCAATCCAAGGATTTTGCGACTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
-tggctgg
- - - - - - - - - - - - - - - - -ttccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttggtg