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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtcaatctactaaattaccttcaaaatatcagttgcatctgcaattctgcgcgttgcaaaatcattgcaagaatgagatgtaaattatatgtgatctgaatgtgcaatcgttgttttttgtgatcagGTGGAAGGCGCATTCGTGCAAGGGATCGGCTTCTTCACGAACGAGGAGTACACGACCAACTCCGATGGGCTGGTCATCAACGACGGCACGTGGACGTACA

Basic information

species Oryza sativa
transcript LOC_Os03g57680.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g57680.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G124175_T01 (Zea mays), 3'ss of exon 3
gtcagtcaatctactaaattaccttcaaaatatcagttgcatctgcaattctgcgcgttgcaaaatcattgcaagaatgagatgtaaattatatgtgatctgaatgtgcaatcgttgttttttgtgatcagGTGGAAGGCGCATTCGTGCAAGGGATCGGCTTCTTCACGAACGAGGAGTACACGACCAACTCCGATGGGCTGGTCATCAACGACGGCACGTGGACGTACA
                  | | |  ||||| |  || ||   |||   | ||     |||    |||| | ||  ||   ||  ||   |     |  ||| ||      ||  || ||  ||   | ||||||||||| |||||||| |||||  | ||||||||||| |||||||||||| | |||||||| || ||| |||||||| |||| ||||| ||||||||||
-----------------gtcagccccaaaacaaaagctggtgctg--gtccta----ttg----atcacttcatcaa-aggaaatacgctgc---tcctctaaac-----attattcttcattaaca-cagGTGGAAGGTGCATTCGTCCAAGGAGTAGGCTTCTTCACAAACGAGGAGTACGCAACCAACTCTGACGGGTTGGTCATCCACGATGGCACATGGACGTACA

upper sequence: LOC_Os03g57680.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G141535_T01 (Zea mays), 3'ss of exon 8
gtcagtcaatctactaaattaccttcaaaatatcagttgcatctgcaattctgcgcgttgcaaaatcattgcaagaatgagatgtaaattatatgtgatctgaatgtgcaatcgttgttttttgt--gatcagGTGGAAGGCGCATTCGTGCAAGGGATCGGCTTCTTCACGAACGAGGAGTACACGACCAACTCCGATGGGCTGGTCATCAACGACGGCACGTGGACGTACA
                                |||| |  |     ||  | |  |   ||| |  ||||| |  ||  | |          ||||| ||    | |  || |  ||||  |  |     ||| | || |||   || || ||||| || || ||||||||||||||||| |||| ||| || ||||| ||  |||||||| |||||||||| ||||||||||
-------------------------------gtcagctataaaatgaacacagttcac-gcaga-ccattgtatcaacaaaa----------atgtgctcctcctctaaaaacactgttcatcatttatccagATCGAGGGCTGCTTTGTCCAAGGAATAGGGTTCTTCACGAACGAGGACTACAAGACGAATTCCGACGGCTTGGTCATCCACGACGGCACATGGACGTACA

upper sequence: LOC_Os03g57680.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G141473_T01 (Zea mays), 3'ss of exon 8
gtcagtcaatctactaaattaccttcaaaatatcagttgcatctgcaattctgcgcgttgcaaaatcattgcaagaatgagatgtaaattatatgtgatctgaatgtgcaatcgttgttttttgtgatcagGTGGAAGGCGCATTCGTGCAAGGGATCGGCTTCTTCACGAACGAGGAGTACACGACCAACTCCGATGGGCTGGTCATCAACGACGGCACGTGGACGTACA
                  | | | | ||||||  |   ||  | ||           |  | |  ||||   | |||       ||  ||     |  ||| ||      ||  || ||  ||   | |||||||||||||||||| | |||||  | |||||||| || |||||||||||||| || ||||| || ||| |||||||| |||| ||||| ||||||||||
-----------------gtcaacctgaaaataaaaaccgctccagc-----------tgaccacttcatcaaaggaa------atatgttgc---tcctctaaac-----attattcttcattaaca-cagGTGGAAGGCGCATTCATCCAAGGAGTAGGCTTCTTTACAAACGAGGAGTACACAACAAACTCTGAGGGGTTGGTCATCCACGATGGCACATGGACGTACA

upper sequence: LOC_Os03g57680.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G019799_T01 (Zea mays), 3'ss of exon 8
gtcagtcaatctactaaattaccttcaaaatatcagttgcatctgcaattctgcgcgttgcaaaatcattgcaagaatgagatgtaaattatatgtgatctgaatgtgcaatcgttgttttttgtgatcagGTGGAAGGCGCATTCGTGCAAGGGATCGGCTTCTTCACGAACGAGGAGTACACGACCAACTCCGATGGGCTGGTCATCAACGACGGCACGTGGACGTACA
                                | ||   ||    |||  ||    | ||  | | | ||     |  || || |          || ||||||      |  | | ||  ||    ||||||||||||||||||| | |||||  | |||||||||||||||||||||||||  || ||| |||| ||  |||||||| | |||||||| ||||||||||
-------------------------------gttagcctcaa--acaaaacttgatgctgttagaccgtttgccaacagaaatatgc--------tgctctgaac-----actgctattgatt-cactcagGTGGAAGGCGCATTCATCCAAGGAGTGGGCTTCTTCACGAACGAGGAGTACAAAACGAACACCGACGGCATGGTCATCCATGACGGCACATGGACGTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgagatgtaaattatatgtgatctgaatgtgcaatcgttgttttttgtgatcagGTGGAAGGCGCATTCGTGCAAGGGATCGGCTTCTTCACGAACGAGGAGTACACGACCAACTCCGATGGGCTGGTCATCAACGACGGCACGTGGACGTACA
                                      ttgtttttt  CT-rich tract
     atgtaaattatatgt  TA-rich tract