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...catttattttgccacttggatctcatgttttaaatattttgtaccaatctatattgccgatgataaccttattttcttttgttgatttggaacattctagAAATTACAGGACCAAAATATATCCGATGGGTACTCTCTGATGAGGCGGCGATTGTTGAACGACCGTCTTCTACTTGCTGAAAGAAGCTTTCTGCAAGCTG
species | Oryza sativa |
transcript | LOC_Os03g57660.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCATTGAAGATCTTTCTGATGCAGGCTTAGAATTTCTGAAAGAGGCAAAG AAATTACAGGACCAAA-TATATCCGATGGGTACTCTCTGATGAGGCGGCGAEST: gi|218498996|gb|FG968225.1|FG968225
genomic: CCATTGAAGATCTTTCTGATGCAGGCTTAGAATTTCTGAAAGAGGCAAAGgtatgttcaa ... aacattctagAAATTACAGGACCAAAATATATCCGATGGGTACTCTCTGATGAGGCGGCGA
EST: CCATTGAAGATCTTTCTGATGCAGGCTTAGAATTTCTGAAAGAGGCAAAG AAATTACAGGACCAAAATATATCCGATGGGTACTCTCTGATGAGGCGGCGAEST: gi|425889|gb|D22567.1|D22567
genomic: CCATTGAAGATCTTTCTGATGCAGGCTTAGAATTTCTGAAAGAGGCAAAGgtatgttcaa ... aacattctagAAATTACAGGACCAAAATATATCCGATGGGTACTCTCTGATGAGGCGGCGA
EST: CCATTGAAGATCTTTCTGATGCAGGCTTAGAATTTCTGAAAGAGGCAAAG AAATTACAGGACCAAAATATATCCGATGGGTACTCTCTGGATGAGGCGGCGEST: gi|87017363|gb|CI301399.1|CI301399
genomic: CCATTGAAGATCTTTCTGATGCAGGCTTAGAATTTCTGAAAGAGGCAAAGgtatgttcaa ... aacattctagAAATTACAGGACCAAAATATATCCGATGGGTACTCTCTG-ATGAGGCGGCG
EST: CCATTGAAGATCTTTCTGATGCAGGCTTAGAATTTCTGAAAGAGGCAAAG AAATTACAGGACCAAAATATATCCGATGGGTACTCTCTGATGAGGCGGCGA
genomic: CCATTGAAGATCTTTCTGATGCAGGCTTAGAATTTCTGAAAGAGGCAAAGgtatgttcaa ... aacattctagAAATTACAGGACCAAAATATATCCGATGGGTACTCTCTGATGAGGCGGCGA
aatctatattgccgatgataaccttattttcttttgttgatttggaacattctagAAATTACAGGACCAAAATATATCCGATGGGTACTCTCTGATGAGGCGGCGATTGTTGAACGACCGTCTTCTACTTGCTGAAAGAAGCTTTCTGCAAGCTG
ttattttcttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttattttgccacttggatctcatgttttaaatattttgtaccaatctatattgccgatgataaccttattttcttttgttgatttggaacattctagAAATTACAGGACCAAAATATATCCGATGGGTACTCTCTGATGAGGCGGCGATTGTTGAACGACCGTCTTCTACTTGCTGAAAGAAGCTTTCTGCAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG