1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgtgtgtctcaactctcaactcacgacattgccagttaccatcgctttaccgcaaaatatttacattataatttacacagaaaagtttcaattgattcctgattccaccttcatcttacttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTATGGCCGGCATGGGAGGAGCTCCTCATGGAGGCCTTGATCACATCATGG
species | Oryza sativa |
transcript | LOC_Os03g57130.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGCCTCCCCAACGCGCTGTAAGATGGAACCCTC-ACAACTTCCTCCAG GATGATCATGTCACAAGGCAGTTGGCTCCAGCAGCTGCTGCACAACATGACEST: gi|87026215|gb|CI252365.1|CI252365
genomic: CTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGC-GTTGGCTCCAGCAGCTGCTGCACAACATGAC
EST: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|87010056|gb|CI279153.1|CI279153
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|88485325|gb|CI422596.1|CI422596
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: GCTGCCTCCCCAACGCGGTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|89198053|gb|CI117531.1|CI117531
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|89198745|gb|CI003482.1|CI003482
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|12622771|gb|AU172984.1|AU172984
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: CCTCAACAACTTCCTCCAG GATGATCATGTCNCAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|86504776|gb|CI147409.1|CI147409
genomic: CCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|87029166|gb|CI276434.1|CI276434
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|88514299|gb|CI441805.1|CI441805
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: CAACAACTTCCTGCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|86504154|gb|CI146787.1|CI146787
genomic: CAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|88519245|gb|CI446899.1|CI446899
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: ATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|88227912|gb|CI227392.1|CI227392
genomic: ATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|88272723|gb|CI386578.1|CI386578
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: CCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|88239243|gb|CI240405.1|CI240405
genomic: CCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|86494403|gb|CI137036.1|CI137036
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|87011439|gb|CI279348.1|CI279348
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|88205866|gb|CI205715.1|CI205715
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: CCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|86501806|gb|CI144439.1|CI144439
genomic: CCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTEST: gi|86598079|gb|CI278469.1|CI278469
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
EST: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAG GATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
genomic: GCTGCCTCCCCAACGCGCTGAAAGATGGAACCCTCAACAACTTCCTCCAGgtgtgtgtct ... acttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACT
ttacacagaaaagtttcaattgattcctgattccaccttcatcttacttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTATGGCCGGCATGGGAGGAGCTCCTCATGGAGGCCTTGATCACATCATGG
atcttac putative branch site (score: 29)
ccttcatcttactt CT-rich tract
aaaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgtctcaactctcaactcacgacattgccagttaccatcgctttaccgcaaaatatttacattataatttacacagaaaagtttcaattgattcctgattccaccttcatcttacttgcgcagGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTATGGCCGGCATGGGAGGAGCTCCTCATGGAGGCCTTGATCACATCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG