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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattttactgctcaatagtgcatgctgaatcttcaccttctgtaatcagtcaaataattcacttgttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG

Basic information

species Oryza sativa
transcript LOC_Os03g52840.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G135283_T03 (Zea mays), 3'ss of exon 8
----------------------------------------------------------gtgaattttactgctcaatagtgcatgctgaatcttcaccttctgta----atcagtcaaataattcact--tgttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
                                                           |  |||  |  |  | |||  | |   |||| |   | ||| | |     |||| |||||||||||  |  |||||||   ||  ||| | ||  |||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
gcaaggtttctttccacgatagtattttttctccaagatgcaagggagctgcacattattatattacagagaactatacagaacattgaaccgcgatctttttttttttatcaatcaaataattccataatgttatgtg-tcgacagATATGCAACAAGCAGAAGGCAATACTTCTAGCAGACATGGCACATATTAGTGGGCTTGTTGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 9
----------------gtgaattttactgctcaatagtgcatgctgaatcttcacc--ttctgtaatcagtcaaataattcacttgttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
                  | ||    ||| |   |  || |   |  |  || |    | || |       | ||   |  | |||| | |||   | ||||||||||| || ||||| || ||| |  | |||||||||||||| ||||||||  | || |||||||||||  | ||||| |||||||||||||||||||
ctttttttcttggtgaagggataaggctg-ttgttgttgtaccttttactttgaatgatactatggaagtcccaaggttaaatttgtgaagcatgttacagGTTTGTGATAAACAGAAAGCTATATTATTGGCAGATATGGCACACATCAGTGGATTGGTTGCAGCTGGTGTCATCCCATCACCTTTTGATTATGCAGATG

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 8
-----gtgaattttactgctca-atagtgca--tgctgaatcttc-accttctgtaatc-------agtcaaataattcactt-gttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
      |   ||||  ||     |||  ||   || || | |||  || ||   | ||        ||||  |   || | || || |  ||   | |||||||| || || ||||| || |||||  | |||||||||||||| ||||||||  | || |||||||||||  | ||||| |||||||||||||| ||||
cttttttagtttttggtgaagggataaggctgttgttgtaccttttactttgaatgatactatggaagtcccaaggttaattttgtgaaacatgttacagGTTTGCGATAAACAGAAAGCTATACTATTGGCAGATATGGCACACATCAGTGGATTGGTTGCAGCTGGTGTCATCCCATCACCTTTTGATTATGCTGATG

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 8
---------------------------------------gtgaatttta--ctgctcaatagtgcatg---ctgaatcttcacc-ttctgtaatcagtcaaataattcacttgttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
                                        | ||| |||   ||      | |   ||    | ||| |  |   || | |       ||||   |  |||||| | |||   | ||||| ||||| || ||||| ||  | ||  | |||||||||||||| ||||||||  | || |||||||||||| | || || |||||||||||||||||||
gtaacttgttgattatacaaaatgattttttaaatatagataaatattaaattgtcttggaatttgtggttttaaatttgaatggttatttggaacaccaaaggttgaacttgtgaagcatgttacagGTGTGTGATAAACAGAAAGCTGTGCTGTTGGCAGATATGGCACACATCAGTGGATTAGTTGCAGCTGGTGTTATCCCTTCACCTTTTGATTATGCAGATG

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA02G38160.2 (Glycine max), 3'ss of exon 8
gtgaattttactgctcaatagtgcatgctgaatcttcaccttctgtaa----tcagtca----aataattcacttgttatgc---aatctg--cagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
|| |||| ||       |||  | |   |   | || |   | |  ||    |||||||     ||| |  |  |  |||||   ||| ||  ||||| ||||| |||||||||||| | ||  | || ||||||||||||||||||||  | || || || |||||| |||| ||||||||||||||||||||||
gtaaattatatc---tgatacagaaacttaggtatttaatgtttagaacaattcagtcatgatgatattgaatcttatatgcttgaatttgtacagGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATG

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA14G36280.1 (Glycine max), 3'ss of exon 8
gtgaattttactgctcaatagtgcatgctgaatcttcaccttctgtaa----tcagtca----aataattcacttgttatgc---aatctgca--gGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
  | | |||| |     |||  | |   |   | || |   | |  ||    |||||||      || |  |  | ||||||   ||| || |  ||| ||||| |||||||||||| | ||  | || ||||||||||||||||||||  | || || || |||||| |||| ||||||||||||||||||||||
--gtaattta-tatctgatacagaaacttaggtatttaatgtttagaacaattcagtcatgatggtattgaatcttttatgcttgaatttgtatagGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCCGGTGTTATTCCTTCTCCTTTTGATTATGCAGATG

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
lower sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 8
gtgaattttactgctcaatagtgcatgctgaatcttcaccttctgtaat--cagtcaaataattcacttgttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
|| || | |  |    | |  ||  ||   | |  | |  | |   | |  ||||     |  | |    | |   ||  ||||||| ||| ||||||| |||||| |  |  | || |||||||| ||||| |||||| | || || ||||| ||| |||| ||||||||||| ||||||||||
gtaaagtattgtctcaactcttgagtgtgaagt--ttagttacaaaagttgcagttttcaaggttatgcataa--aaaattgcagGTCTGTAACAAGCAAAAGGCAGTTATGTTGGCTGATATGGCTCATATTAGTGGGTTGGTTGCTGCTGGCGTTATTCCTTCTCCTTTTGAGTATGCAGATG

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv00s0211g00070.t01 (Vitis vinifera), 3'ss of exon 8
--------------gtgaattttactgctcaatagtgcatgctgaatcttcaccttctg-taatcagtcaaat---aatt-cacttgttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
                 |||  |||   |   |      |  ||  |   |  | | || |  || |  || |   | || || || | | | | |   |||||||||||||||||||| || ||  |  | ||||||||||||||||| |||||| | || || ||||||||| | ||||| || ||||| ||||||||| 
gtaactgcaatcacaacaatcatacatttttttctctttttttggtttgacctcatttgatggtctggaaagtccaagttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCACCATTTGAGTATGCAGATA

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 8
-------------------------------gtgaattttactgctcaatagtgcatgctgaatcttcaccttctgtaatcagtcaaataattcacttgttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
                               ||   ||||  | |||  |  |   |      || |    |  | |    |||| ||   | || || | | | | |   |||||||||||||||||||| || ||  |  | ||||||||||||||||| |||||| | || || ||||||||| | ||||| || ||||| ||||||||| 
gtaactgcaatcaaaacaatcatacatctgagtttcttttttttctctttttttggtttgacctcatttgatggtctggaaagtccaa-gttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCGCCATTTGAGTATGCAGATA

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv00s0211g00080.t01 (Vitis vinifera), 3'ss of exon 1
------------------gtgaattttactgctcaatagtgcatgctgaatcttcaccttctgtaatcagtcaaataattcacttgttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
                  ||   ||||  | |||  |  |   |      || |    |  | |    |||| ||   | || || | | | | |   |||||||||||||||||||| || ||  |  | ||||||||||||||||| |||||| | || || ||||||||| | ||||| || ||||| ||||||||| 
aaacaatcatacatctgagtttcttttttttctctttttttggtttgacctcatttgatggtctggaaagtccaa-gttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCGCCATTTGAGTATGCAGATA

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 3'ss of exon 8
---------------------------------------------gtga-attttactgctcaatagtgcatgctgaatcttcaccttctgtaatcagtcaaataattcacttgttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
                                                | |||  | | ||| ||  |   |    | |||  |  ||  | ||||    || |  || | || ||| | | |   ||||| |||||||||||||| ||  |  |  | ||||| ||||||||||| |||||| | || || ||||||||| | | |||||||||||| ||||| ||| 
gtaagagattttggtttgagggacactactgcgttcatcatagtcacaacattaaagttctctattattattttaaagtctaaatgtttagaaatcgtgtaact--ttaaattcttagg-atttaacagGTGTGTGACAAGCAGAAAGCTGTCATGTTGGCAGACATGGCACATATTAGTGGGTTGGTTGCTGCTGGTGTTATCCAATCTCCTTTTGAATATGCTGATA

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
lower sequence: PP1S21_270V6.1 (Physcomitrella patens), 3'ss of exon 8
-----------------------------------------------gtgaattttactgctcaatagtgcatgctgaatcttcaccttctgtaatca---gtcaaataattcacttgtta-tgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
                                                   || ||| |||    ||||   ||  | ||||      |   |||||    ||   | || ||||   |   ||   | |  |||||||||||||||| ||||| || || || || || ||||| ||||||||||| ||||| |||| ||| ||||| |||||||| ||||| ||||| ||||
gtgggttgctagtccttttaacaggtttctatgattggatttgttacacccatattattgcaatttagtatttgaaggatctgtgaacttgttaatcccccgtttgaaaactcacgactggctgttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGTGGACTTGTAGCAGGTGGCGTTGTCCCATCTCCCTTTGACTATGCCGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29674139|gb|CB670414.1|CB670414
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|38472219|gb|CF956350.1|CF956350
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|27576793|gb|CA999487.1|CA999487
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|58691585|gb|CK080272.1|CK080272
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|29672938|gb|CB669213.1|CB669213
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|25798315|gb|CA754276.1|CA754276
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|38472528|gb|CF956660.1|CF956660
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|58661735|gb|CK050415.1|CK050415
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|58589569|gb|CF987877.1|CF987877
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGAGTATGACCGCATGCGGAAG                         GTTTGTGCACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAG
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTG-ACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAG
EST: gi|13420583|gb|AU174673.1|AU174673
EST:     CGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|29629705|gb|CB634714.1|CB634714
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|84117692|gb|CD285458.1|CD285458
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|38471655|gb|CF955786.1|CF955786
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|33800499|gb|CF326119.1|CF326119
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|29681405|gb|CB677680.1|CB677680
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|29681406|gb|CB677681.1|CB677681
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|58689542|gb|CK078229.1|CK078229
EST:     GGGTGCAAGTGCATATGCGCGTCTTTATGACCATGACCGCATGCGGCAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAG
genomic: GGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGG-AAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAG
EST: gi|14571290|gb|BI118658.1|BI118658
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|58692794|gb|CK081481.1|CK081481
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|58609394|gb|CK037427.1|CK037427
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|29674038|gb|CB670313.1|CB670313
EST:     CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
genomic: CGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGT
EST: gi|218505280|gb|FG952910.1|FG952910
EST:     TGACTATGACCGCATGCGGAAG                         GTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAAG
genomic: TGACTATGACCGCATGCGGAAGgtgaatttta ... caatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATC-AG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatcttcaccttctgtaatcagtcaaataattcacttgttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
                        tcaaataatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaattttactgctcaatagtgcatgctgaatcttcaccttctgtaatcagtcaaataattcacttgttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG