1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...accattttttgagcagctcaaaacttcactctgcctacacttttcattcacttgcacactgaaagatgataatatctaaccagtttatttatcaactcagGTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGAGAGAGCCGTGCTCGACGCATGGATGGGAACTGGGAGTGTGTCTGTGAGG
species | Oryza sativa |
transcript | LOC_Os03g51650.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGCACTTTCTACTGGGTGATCAACATTCTTCAG GTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGAEST: gi|4715479|gb|AU056596.1|AU056596
genomic: AGCACTTTCTACTGGGTGATCAACATTCTTCAGgtaagacatc ... atcaactcagGTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGA
EST: ATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG GTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGAEST: gi|33381647|gb|CF196990.1|CF196990
genomic: ATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAGgtaagacatc ... atcaactcagGTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGA
EST: ATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG GTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGAEST: gi|25798102|gb|CA754063.1|CA754063
genomic: ATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAGgtaagacatc ... atcaactcagGTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGA
EST: ATAACTCACCATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG GTCCCGGGTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGAEST: gi|29669368|gb|CB665643.1|CB665643
genomic: ATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAGgtaagacatc ... atcaactcagGTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGA
EST: ATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG GTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGAEST: gi|33380870|gb|CF196213.1|CF196213
genomic: ATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAGgtaagacatc ... atcaactcagGTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGA
EST: ATAATTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAG GTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGAEST: gi|396941381|gb|HO188590.1|HO188590
genomic: ATAACTCACAATCATGCAGCACTTTCTACTGGGTGATCAACATTCTTCAGgtaagacatc ... atcaactcagGTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGA
EST: GGGTGATCAACATTCTTCAG GTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGA
genomic: GGGTGATCAACATTCTTCAGgtaagacatc ... atcaactcagGTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGA
attcacttgcacactgaaagatgataatatctaaccagtttatttatcaactcagGTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGAGAGAGCCGTGCTCGACGCATGGATGGGAACTGGGAGTGTGTCTGTGAGG
atctaac putative branch site (score: 42)
aaagatgataatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accattttttgagcagctcaaaacttcactctgcctacacttttcattcacttgcacactgaaagatgataatatctaaccagtttatttatcaactcagGTCCCGGTTGCGTTAAGTGTATTCCTGTGGGAGGGCGTACAGCTGTGCAGAGAGAGCCGTGCTCGACGCATGGATGGGAACTGGGAGTGTGTCTGTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - gagcagc
- - - - - - - - - - - - - - - -tgcctac
- - - - - - - - - - - - - - - - - - - - - - - - -acttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgata