1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgcaaggaaaacatgttttacttaaacctgacccaacttggattcacatttcttgtcgatcttctgaatgtgttttaagctgttctcctgtgttacacagTTCATTGTAGGAATCCACAAACTGAGTCTTTTCTGCAGCTTCTAAATCTCCCGTATCTTCTGGACTCATCAAATTCTTATG
species | Oryza sativa |
transcript | LOC_Os03g51540.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCTTATGATCCTTCTTGTCAAGCATCCAATCCCTCCATAACAG TTCATTGTAGGAATCCACAAACTGAGTCTTTTCTGCAGCTTCTAAATCTCCEST: gi|86493599|gb|CI136232.1|CI136232
genomic: ATCTTATGATCCTTCTTGTCAAGCATCCAATCCCTCCATAACAGgtgagctttg ... tgttacacagTTCATTGTAGGAATCCACAAACTGAGTCTTTTCTGCAGCTTCTAAATCTCC
EST: TGCTGCATCTTATGATCCTTCTTGTCAAGCATCCAATCCCTCCATAACAG TTCATTGTAGGAATCCACAAACTGAGTCTTTTCTGCAGCTTCTAAATCTCCEST: gi|163921250|gb|EG714138.1|EG714138
genomic: TGCTGCATCTTATGATCCTTCTTGTCAAGCATCCAATCCCTCCATAACAGgtgagctttg ... tgttacacagTTCATTGTAGGAATCCACAAACTGAGTCTTTTCTGCAGCTTCTAAATCTCC
EST: TGCTGCATCTTATGATCCTTCTTGTCAAGCATCCAATCCCTCCATAACAG TTCATTGTAGGAATCCACAAACTGAGTCTTTTCTGCAGCTTCTAAATCTCCEST: gi|88320384|gb|CI523127.1|CI523127
genomic: TGCTGCATCTTATGATCCTTCTTGTCAAGCATCCAATCCCTCCATAACAGgtgagctttg ... tgttacacagTTCATTGTAGGAATCCACAAACTGAGTCTTTTCTGCAGCTTCTAAATCTCC
EST: ATCCTTCTTGTCAAGCATCCAATCCCTCCATAACAG TTCATTGTAGGAATCCACAAACTGAGTCTTTTCTGCAGCTTCTAAATCTCC
genomic: ATCCTTCTTGTCAAGCATCCAATCCCTCCATAACAGgtgagctttg ... tgttacacagTTCATTGTAGGAATCCACAAACTGAGTCTTTTCTGCAGCTTCTAAATCTCC
acatttcttgtcgatcttctgaatgtgttttaagctgttctcctgtgttacacagTTCATTGTAGGAATCCACAAACTGAGTCTTTTCTGCAGCTTCTAAATCTCCCGTATCTTCTGGACTCATCAAATTCTTATG
ttctcctgt CT-rich tract
tgttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaaggaaaacatgttttacttaaacctgacccaacttggattcacatttcttgtcgatcttctgaatgtgttttaagctgttctcctgtgttacacagTTCATTGTAGGAATCCACAAACTGAGTCTTTTCTGCAGCTTCTAAATCTCCCGTATCTTCTGGACTCATCAAATTCTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
tgcaagg
- - - - -aacatgt
- - - - - - - - - - - - - - - - - - - - gattcac
- - - - - - - - - - - - - - - - - - - - - - - - tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaatg