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gtactcgcttttatcctgaactatgctcaccctctcctcatattaactgcctgttgcacatctgaacctttggtttgcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG
species | Oryza sativa |
transcript | LOC_Os03g50480.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|58695799|gb|CK084486.1|CK084486
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|58693865|gb|CK082552.1|CK082552
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|58675297|gb|CK063984.1|CK063984
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTEST: gi|45244957|gb|AB118181.1|AB118181
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCT
EST: CCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|58657583|gb|CK046263.1|CK046263
genomic: CCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|29612833|gb|CB617846.1|CB617846
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGGGTTGCTGGGACTTACEST: gi|29671540|gb|CB667815.1|CB667815
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTAC
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|58596192|gb|CK006720.1|CK006720
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|29664693|gb|CB660968.1|CB660968
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|58654844|gb|CK043524.1|CK043524
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTEST: gi|58682481|gb|CK071168.1|CK071168
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|15008682|gb|AU223070.1|AU223070
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|58670270|gb|CK058956.1|CK058956
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|58597742|gb|CK008270.1|CK008270
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|29689390|gb|CB685665.1|CB685665
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|58601534|gb|CK012062.1|CK012062
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|29614791|gb|CB619804.1|CB619804
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTEST: gi|29671584|gb|CB667859.1|CB667859
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTEST: gi|12622980|gb|AU173193.1|AU173193
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
EST: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTG TTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
genomic: GACTTTGAGTCAATTAAAAAGCTTCTGGCATCTCCGAAGTTTACATTCTGgtactcgctt ... gcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGT
ctctcctcatattaactgcctgttgcacatctgaacctttggtttgcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG
tattaac putative branch site (score: 1)
cactttt putative PPT
tcatattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcgcttttatcctgaactatgctcaccctctcctcatattaactgcctgttgcacatctgaacctttggtttgcacttttagTTATGATGCTCTCCATGGTGTTGCTGGGACTTACGCAACACGCATCTTTGTGGAAGAGCTTGGTGCTGCTGAAAGCTCATTGTTGAACTGTGTTCCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA