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...tttctgagttcgtctagggggtcaacgcttgttagtggctttttatcatgagctggatcaataataatcttgaaaacatcatttgcttttgttttttcagGGTACGCCTCCTAGTGCTCAGTATATTCCGATATTTGCACTGTTCTCCCCACTGTTTATTTTACAAGGCGCTGGTGTCCTTTTCTCTCTAGCAAGATTGT
species | Oryza sativa |
transcript | LOC_Os03g49900.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAAAATACCACTGGTGATTTTCCAAGTTTTGCTTTGTATGCGCTTGGAG GGTACGCCTCCTAATGCTCAGTATATTCCCATATTTGCACTGGTCTCCCCAEST: gi|29659984|gb|CB656259.1|CB656259
genomic: TGAAAATACCACTGGTGATTTTCCAAGTTTTGCTTTGTATGCGCTTGGAGgtacgtgtca ... gttttttcagGGTACGCCTCCTAGTGCTCAGTATATTCCGATATTTGCACTGTTCTCCCCA
EST: TTTCCAAGTTTTGCTTTGTATGCGCTTGGAG GGTACGCCTCCTAGTGCTCAGTATATTCCGATATTTGCACTGTTCTCCCCAEST: gi|29668947|gb|CB665222.1|CB665222
genomic: TTTCCAAGTTTTGCTTTGTATGCGCTTGGAGgtacgtgtca ... gttttttcagGGTACGCCTCCTAGTGCTCAGTATATTCCGATATTTGCACTGTTCTCCCCA
EST: TGAAAATACCACTGGTGATTTTCCAAGTTTTGCTTTGTATGCGCTTGGAG GGTACGCCTCCTAGTGCTCAGTATATTCCGATATTTGCACTGTTCTCCCCAEST: gi|87005436|gb|CI285658.1|CI285658
genomic: TGAAAATACCACTGGTGATTTTCCAAGTTTTGCTTTGTATGCGCTTGGAGgtacgtgtca ... gttttttcagGGTACGCCTCCTAGTGCTCAGTATATTCCGATATTTGCACTGTTCTCCCCA
EST: TGAAAATACCACTGGTGATTTTCCAAGTTTTGCTTTGTATGCGCTTGGAG GGTACGCCTCCTAGTGCTCAGTATATTCCGATATTTGCACTGTTCTCCCCAEST: gi|29616594|gb|CB621606.1|CB621606
genomic: TGAAAATACCACTGGTGATTTTCCAAGTTTTGCTTTGTATGCGCTTGGAGgtacgtgtca ... gttttttcagGGTACGCCTCCTAGTGCTCAGTATATTCCGATATTTGCACTGTTCTCCCCA
EST: TGAAAATACCACTGGTGATTTTCCAAGTTTTGCTTTGTATGCGCTTGGAG GGTACGCCTCCTAGTGCTCAGTATATTCCGATATTTGCACTGTTCTCCCCAEST: gi|29638900|gb|CB643909.1|CB643909
genomic: TGAAAATACCACTGGTGATTTTCCAAGTTTTGCTTTGTATGCGCTTGGAGgtacgtgtca ... gttttttcagGGTACGCCTCCTAGTGCTCAGTATATTCCGATATTTGCACTGTTCTCCCCA
EST: TGAAAATACCACTGGTGATTTTCCAAGTTTTGCTTTGTATGCGCTTGGAG GGTACGCCTCCT
genomic: TGAAAATACCACTGGTGATTTTCCAAGTTTTGCTTTGTATGCGCTTGGAGgtacgtgtca ... gttttttcagGGTACGCCTCCT
tcatgagctggatcaataataatcttgaaaacatcatttgcttttgttttttcagGGTACGCCTCCTAGTGCTCAGTATATTCCGATATTTGCACTGTTCTCCCCACTGTTTATTTTACAAGGCGCTGGTGTCCTTTTCTCTCTAGCAAGATTGT
tttgcttttgtttttt CT-rich tract
aataataatcttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctgagttcgtctagggggtcaacgcttgttagtggctttttatcatgagctggatcaataataatcttgaaaacatcatttgcttttgttttttcagGGTACGCCTCCTAGTGCTCAGTATATTCCGATATTTGCACTGTTCTCCCCACTGTTTATTTTACAAGGCGCTGGTGTCCTTTTCTCTCTAGCAAGATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
tttctga
- - - - - - - - - - - - - gcttgtt
- - - - - - - - - - - - - - - - - - - - - - - catgagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatca