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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacctatgtttgtgagttccttgcctcgcctcgccttgcgcttgtacatcagtatcgttgctagacatattctcctaaatattttatcccctaaattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG

Basic information

species Oryza sativa
transcript LOC_Os03g49600.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29638181|gb|CB643190.1|CB643190
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29638181|gb|CB643190.1|CB643190
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29638181|gb|CB643190.1|CB643190
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29638181|gb|CB643190.1|CB643190
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|88996445|gb|CI259949.1|CI259949
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|88996445|gb|CI259949.1|CI259949
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|88996445|gb|CI259949.1|CI259949
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|88996445|gb|CI259949.1|CI259949
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29667383|gb|CB663658.1|CB663658
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29667383|gb|CB663658.1|CB663658
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29667383|gb|CB663658.1|CB663658
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29667383|gb|CB663658.1|CB663658
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29672037|gb|CB668312.1|CB668312
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29672037|gb|CB668312.1|CB668312
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29672037|gb|CB668312.1|CB668312
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29672037|gb|CB668312.1|CB668312
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|27576307|gb|CA999001.1|CA999001
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAG                         G
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGgttacctatg ... aattctgcag-
EST: gi|27576307|gb|CA999001.1|CA999001
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAG                         G
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGgttacctatg ... aattctgcag-
EST: gi|29667349|gb|CB663624.1|CB663624
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29667349|gb|CB663624.1|CB663624
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29667349|gb|CB663624.1|CB663624
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29667349|gb|CB663624.1|CB663624
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|27577942|gb|CB000637.1|CB000637
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAG                         G
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGgttacctatg ... aattctgcag-
EST: gi|27577942|gb|CB000637.1|CB000637
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAG                         G
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGgttacctatg ... aattctgcag-
EST: gi|29678658|gb|CB674933.1|CB674933
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29678658|gb|CB674933.1|CB674933
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29678658|gb|CB674933.1|CB674933
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29678658|gb|CB674933.1|CB674933
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29659818|gb|CB656093.1|CB656093
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAG                         G
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGgttacctatg ... aattctgcag-
EST: gi|29659818|gb|CB656093.1|CB656093
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAG                         G
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGgttacctatg ... aattctgcag-
EST: gi|29657771|gb|CB654046.1|CB654046
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29657771|gb|CB654046.1|CB654046
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29657771|gb|CB654046.1|CB654046
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a
EST: gi|29657771|gb|CB654046.1|CB654046
EST:     GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATG                
genomic: GCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATT----GG----C-A-Ggttacctatg ... a


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtatcgttgctagacatattctcctaaatattttatcccctaaattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
                  atattctcctaaatat  TA-rich tract