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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttccttgcctcgcctcgccttgcgcttgtacatcagtatcgttgctagacatattctcctaaatattttatcccctaaattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG

Basic information

species Oryza sativa
transcript LOC_Os03g49600.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86593847|gb|CI260076.1|CI260076
EST:     CAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: CAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|428512|gb|D24663.1|D24663
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTNCGAAAAACGGCAAACCAATTGGCCCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29657771|gb|CB654046.1|CB654046
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|325494326|gb|JG458850.1|JG458850
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29678658|gb|CB674933.1|CB674933
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|163928475|gb|EG711363.1|EG711363
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|27576307|gb|CA999001.1|CA999001
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|27577942|gb|CB000637.1|CB000637
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|88996445|gb|CI259949.1|CI259949
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|33683958|gb|CF312197.1|CF312197
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29667349|gb|CB663624.1|CB663624
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|8856614|gb|AU093932.1|AU093932
EST:     GAGTTATTCAGCCCGATTGGCCAGGTTCCCTATGTTT                         TTCCGGAAAAACGGCAANCCCAATTGGACCACAG
genomic: GAGTTACTCAG-CCGATTGG-CAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGC-GAAAAACGGCAA-ACCAATTGGACCACAG
EST: gi|29672037|gb|CB668312.1|CB668312
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|3107762|gb|D43502.1|D43502
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTCCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|58657255|gb|CK045935.1|CK045935
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|89197084|gb|CI021924.1|CI021924
EST:     GCAGGTTACCTATGTTT                         TTGCGAAAAACAGCAAACCAATTGGACCACAG
genomic: GCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29659818|gb|CB656093.1|CB656093
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29671917|gb|CB668192.1|CB668192
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|58673266|gb|CK061952.1|CK061952
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|86828091|gb|CI274966.1|CI274966
EST:     CTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: CTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|163928720|gb|EG711233.1|EG711233
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|58664218|gb|CK052904.1|CK052904
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAGGCA
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAGGCA
EST: gi|88976936|gb|CI257632.1|CI257632
EST:     AGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: AGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|86501795|gb|CI144428.1|CI144428
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|58679400|gb|CK068087.1|CK068087
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|14981080|gb|BI305771.1|BI305771
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACATATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|88844856|gb|CI022210.1|CI022210
EST:     CAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: CAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29638181|gb|CB643190.1|CB643190
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|9884520|gb|BE607353.1|BE607353
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|86495823|gb|CI138456.1|CI138456
EST:     GCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|86498278|gb|CI140911.1|CI140911
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|87029134|gb|CI276402.1|CI276402
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|218499918|gb|FG954902.1|FG954902
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29667383|gb|CB663658.1|CB663658
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|86494154|gb|CI136787.1|CI136787
EST:     GTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|87010187|gb|CI279284.1|CI279284
EST:     GACGAGTTATTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|58598612|gb|CK009140.1|CK009140
EST:     GCAGCAGACACCGACGAGTTACTCAGGCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|33676122|gb|CF304361.1|CF304361
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|58671738|gb|CK060424.1|CK060424
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|27577236|gb|CA999930.1|CA999930
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|87038444|gb|CI193066.1|CI193066
EST:     CGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: CGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtatcgttgctagacatattctcctaaatattttatcccctaaattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
                  atattctcctaaatat  TA-rich tract