1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gattgtgcaaatcttgatgtttgatgttcataggggtttctatatccattttgctaaattacacattagtatctttttgaacattattgttgtttgtcagGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAG
species | Oryza sativa |
transcript | LOC_Os03g49520.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAG GACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGAEST: gi|7332619|gb|AU085965.1|AU085965
genomic: TTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGgtcgctttac ... tgtttgtcagGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGA
EST: TATACATGCATTGGGCTTAAGCATCNCAAAAAGCTGTCCAATTTCTTAAG GACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGAEST: gi|29684301|gb|CB680576.1|CB680576
genomic: TATACATGCAGTGGGC-TGAGCATCACAAAAAGCTGTCCAATTTCTTAAGgtcgctttac ... tgtttgtcagGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGA
EST: TTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAG GACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGAEST: gi|66919194|gb|CX106042.1|CX106042
genomic: TTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGgtcgctttac ... tgtttgtcagGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGA
EST: TTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAG GACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGA
genomic: TTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGgtcgctttac ... tgtttgtcagGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGA
ccattttgctaaattacacattagtatctttttgaacattattgttgtttgtcagGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAG
tgctaaa putative branch site (score: 4)
tttttgaacattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattgtgcaaatcttgatgtttgatgttcataggggtttctatatccattttgctaaattacacattagtatctttttgaacattattgttgtttgtcagGACAACTGCGGAACCACCAATTTACTACATGCCAGCTAAACCAATAATTGATGATCCGGCTATTGCTGAGGAGAACAAGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
-attgtgc
- - - - - - cttgatg
- - - - - - -ttgatgt
- - - - - - - - - - - - - - - - - - - - - - - - ttttgct